Carubv10004818m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10004818m.g T007827_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.868 1.000
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.838 0.929
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.837 0.949
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.822 0.878
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004818m AP2 140 189
Carubv10004818m AP2 232 283

Links

Other AP2 family TFs
Other Capsella rubella TFs

241 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AP2 Arabidopsis thaliana AT4G36920 I 0.868
Bo1g004960 Brassica oleracea Bo1g004960 I 0.868
Bo7g118400 Brassica oleracea Bo7g118400 I 0.868
Bra011741 Brassica rapa Bra011741 I 0.868
Bra017809 Brassica rapa Bra017809 I 0.868
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.868
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.868
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.868
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.868
Ca_09295 Cicer arietinum Ca_09295 I 0.868
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.868
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.868
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.868
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.867
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.867
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.867
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.867
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.867
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.867
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.867
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.867
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.867
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.867
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.867
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.867
Cla000716 Citrullus lanatus Cla000716 I 0.867
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.867
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.867
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.867
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.867
PK02403.1 Cannabis sativa PK02403.1 I 0.867
29805.m001494 Ricinus communis 29805.m001494 I 0.866
mgf009315m Mimulus guttatus mgf009315m I 0.866
TCM_000665 Theobroma cacao TCM_000665 I 0.864
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.864
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.864
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.863
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.861
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.860
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.859
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.859
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.859
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.859
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.859
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.859
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.859
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.859
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.859
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.859
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.859
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.859
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.859
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.859
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.859
OS05G0121600 Oryza sativa OS05G0121600 I 0.859
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.859
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.859
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.859
Si012635m.g Setaria italica Si012635m.g I 0.859
Si025305m.g Setaria italica Si025305m.g I 0.859
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.859
Ca_02499 Cicer arietinum Ca_02499 I 0.859
28752.m000339 Ricinus communis 28752.m000339 I 0.859
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.859
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.859
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.859
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.859
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.859
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.859
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.859
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.859
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.859
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.858
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.858
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.858
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.858
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.858
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.858
TCM_022077 Theobroma cacao TCM_022077 I 0.858
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.858
Pm002492 Prunus mume Pm002492 I 0.858
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.858
MDP0000200319 Malus domestica MDP0000200319 I 0.858
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.858
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.857
F775_32962 Aegilops tauschii F775_32962 I 0.857
TCM_042000 Theobroma cacao TCM_042000 I 0.857
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.857
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.857
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.857
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.857
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.857
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.857
PK07183.1 Cannabis sativa PK07183.1 I 0.857
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.856
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.856
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.856
29169.m000017 Ricinus communis 29169.m000017 I 0.856
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.856
mgf021945m Mimulus guttatus mgf021945m I 0.856
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.856
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.855
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.855
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.855
Pm000974 Prunus mume Pm000974 I 0.855
MDP0000181606 Malus domestica MDP0000181606 I 0.855
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.854
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.854
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.854
Cla018124 Citrullus lanatus Cla018124 I 0.853
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.853
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.853
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.853
MDP0000137561 Malus domestica MDP0000137561 I 0.852
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.852
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.851
Pm030172 Prunus mume Pm030172 I 0.851
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.851
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.851
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.851
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.849
Ca_14618 Cicer arietinum Ca_14618 I 0.847
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.847
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.846
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.846
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.845
OB06G29960 Oryza brachyantha OB06G29960 I 0.845
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.845
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.845
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.845
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.845
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.844
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.843
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.843
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.842
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.842
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.842
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.842
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.842
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.842
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.842
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.840
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.840
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.840
Ca_12010 Cicer arietinum Ca_12010 I 0.840
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.840
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.838
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.838
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.837
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.837
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.837
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.837
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.837
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.837
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.837
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.837
Bo4g070350 Brassica oleracea Bo4g070350 I 0.836
Bra011939 Brassica rapa Bra011939 I 0.836
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.835
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.834
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.834
OB03G45870 Oryza brachyantha OB03G45870 I 0.834
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.834
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.833
OBART07G08110 Oryza barthii OBART07G08110 I 0.833
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.833
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.833
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.833
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.833
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.833
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.833
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.833
OS07G0235800 Oryza sativa OS07G0235800 I 0.833
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.833
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.833
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.832
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.832
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.832
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.832
Si029636m.g Setaria italica Si029636m.g I 0.832
mgf005133m Mimulus guttatus mgf005133m I 0.832
mgf010466m Mimulus guttatus mgf010466m I 0.832
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.832
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.831
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.831
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.831
Si036068m.g Setaria italica Si036068m.g I 0.831
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.831
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.831
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.831
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.831
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.831
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.830
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.829
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.828
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.827
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.827
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.826
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.826
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.823
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.822
P93632_MAIZE Zea mays P93632_MAIZE D 0.822
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.822
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.821
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.820
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.819
TOE3 Arabidopsis thaliana AT5G67180 I 0.817
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.817
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.817
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.817
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.817
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.816
MDP0000163645 Malus domestica MDP0000163645 I 0.815
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I 0.815
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.814
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.813
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.813
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.812
Bo7g064000 Brassica oleracea Bo7g064000 I 0.811
Bra012139 Brassica rapa Bra012139 I 0.811
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.811
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.811
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.811
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.810
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.803
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.801
OS03G0818800 Oryza sativa OS03G0818800 I 0.799
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.796
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.796
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.795
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.795
Cla020549 Citrullus lanatus Cla020549 I 0.789
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.784
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.780
Cla018549 Citrullus lanatus Cla018549 I 0.776
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.724
Si006371m.g Setaria italica Si006371m.g I 0.713
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.708
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I 0.689
PK14490.1 Cannabis sativa PK14490.1 I 0.689
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I 0.680