Pavir.Da00466 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Da00466 T009402_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
P93632_MAIZE
M09712_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GL15_01 		0.856 0.980
Q9XHD4_PETHY
M09737_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2A_01 		0.815 0.867
Q9XHD3_PETHY
M09736_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AP2B_01 		0.791 0.816
RAP2.7
M00845_2.00 		Arabidopsis thaliana
KRCGRGGD
HCCYCGYM		 PBM
Franco-Zorrilla et al.(2014)
TOE1 		0.784 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da00466.1.p AP2 52 101
Pavir.Da00466.1.p AP2 144 195

Links

Other AP2 family TFs
Other Panicum virgatum TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J27340 Panicum virgatum Pavir.J27340 I 0.857
GRMZM2G160730 Zea mays GRMZM2G160730 I 0.856
P93632_MAIZE Zea mays P93632_MAIZE D 0.856
Sb10g025053 Sorghum bicolor Sb10g025053 I 0.856
BGIOSGA020813 Oryza indica BGIOSGA020813 I 0.834
OB06G29960 Oryza brachyantha OB06G29960 I 0.834
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I 0.834
OMERI06G22190 Oryza meridionalis OMERI06G22190 I 0.834
ONIVA06G26190 Oryza nivara ONIVA06G26190 I 0.834
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I 0.834
OPUNC06G19990 Oryza punctata OPUNC06G19990 I 0.833
LPERR06G18460 Leersia perrieri LPERR06G18460 I 0.830
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I 0.816
AP2 Arabidopsis thaliana AT4G36920 I 0.815
Bo1g004960 Brassica oleracea Bo1g004960 I 0.815
Bo7g118400 Brassica oleracea Bo7g118400 I 0.815
Bra011741 Brassica rapa Bra011741 I 0.815
Bra017809 Brassica rapa Bra017809 I 0.815
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I 0.815
GLYMA01G39520 Glycine max GLYMA01G39520 I 0.815
GLYMA05G18041 Glycine max GLYMA05G18041 I 0.815
GLYMA17G18640 Glycine max GLYMA17G18640 I 0.815
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I 0.815
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I 0.815
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I 0.815
MTR_4g094868 Medicago truncatula MTR_4g094868 I 0.815
MTR_5g016810 Medicago truncatula MTR_5g016810 I 0.815
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I 0.815
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I 0.815
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I 0.815
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I 0.815
TOE3 Vitis vinifera VIT_07s0031g00220 I 0.815
Ca_09295 Cicer arietinum Ca_09295 I 0.815
Cla000716 Citrullus lanatus Cla000716 I 0.815
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D 0.815
Cucsa.102550 Cucumis sativus Cucsa.102550 I 0.815
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I 0.815
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I 0.815
Carubv10004818m.g Capsella rubella Carubv10004818m.g I 0.815
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I 0.815
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I 0.815
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I 0.815
PK02403.1 Cannabis sativa PK02403.1 I 0.815
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I 0.814
29805.m001494 Ricinus communis 29805.m001494 I 0.814
mgf009315m Mimulus guttatus mgf009315m I 0.814
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I 0.813
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I 0.813
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I 0.812
TCM_000665 Theobroma cacao TCM_000665 I 0.812
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I 0.812
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I 0.812
GRMZM2G700665 Zea mays GRMZM2G700665 I 0.811
Pm000974 Prunus mume Pm000974 I 0.811
MDP0000181606 Malus domestica MDP0000181606 I 0.811
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I 0.810
BGIOSGA017250 Oryza indica BGIOSGA017250 I 0.809
GRMZM2G174784 Zea mays GRMZM2G174784 I 0.809
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I 0.809
OMERI04G22900 Oryza meridionalis OMERI04G22900 I 0.809
ONIVA04G25920 Oryza nivara ONIVA04G25920 I 0.809
OPUNC04G24930 Oryza punctata OPUNC04G24930 I 0.809
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I 0.809
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I 0.809
Sb06g030670 Sorghum bicolor Sb06g030670 I 0.809
Si012635m.g Setaria italica Si012635m.g I 0.809
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I 0.808
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I 0.808
Cucsa.367290 Cucumis sativus Cucsa.367290 I 0.808
Lus10015055.g Linum usitatissimum Lus10015055.g I 0.808
GLYMA03G33470 Glycine max GLYMA03G33470 I 0.807
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I 0.807
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I 0.806
BGIOSGA018911 Oryza indica BGIOSGA018911 I 0.806
GLYMA11G15650 Glycine max GLYMA11G15650 I 0.806
GLYMA12G07800 Glycine max GLYMA12G07800 I 0.806
GLYMA13G40470 Glycine max GLYMA13G40470 I 0.806
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I 0.806
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I 0.806
OPUNC05G01480 Oryza punctata OPUNC05G01480 I 0.806
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I 0.806
OS05G0121600 Oryza sativa OS05G0121600 I 0.806
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I 0.806
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I 0.806
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I 0.806
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I 0.806
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I 0.806
Si025305m.g Setaria italica Si025305m.g I 0.806
TCM_022077 Theobroma cacao TCM_022077 I 0.806
RAP2.7 Vitis vinifera VIT_06s0004g03590 I 0.806
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I 0.806
Ca_02499 Cicer arietinum Ca_02499 I 0.806
Pm002492 Prunus mume Pm002492 I 0.806
28752.m000339 Ricinus communis 28752.m000339 I 0.806
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I 0.806
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I 0.806
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I 0.806
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I 0.806
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I 0.806
MDP0000200319 Malus domestica MDP0000200319 I 0.806
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I 0.806
Pavir.J11433 Panicum virgatum Pavir.J11433 I 0.806
Pavir.J23348 Panicum virgatum Pavir.J23348 I 0.806
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I 0.806
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I 0.806
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I 0.806
Pavir.J37968 Panicum virgatum Pavir.J37968 I 0.805
PK07183.1 Cannabis sativa PK07183.1 I 0.805
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I 0.804
F775_32962 Aegilops tauschii F775_32962 I 0.804
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I 0.804
TCM_042000 Theobroma cacao TCM_042000 I 0.804
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I 0.804
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I 0.804
Traes_1DS_2BB06F54C Triticum aestivum Traes_1DS_2BB06F54C I 0.804
29169.m000017 Ricinus communis 29169.m000017 I 0.804
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I 0.804
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I 0.804
Lus10009374.g Linum usitatissimum Lus10009374.g I 0.804
Lus10019331.g Linum usitatissimum Lus10019331.g I 0.804
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I 0.803
MTR_2g093060 Medicago truncatula MTR_2g093060 I 0.803
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I 0.803
mgf021945m Mimulus guttatus mgf021945m I 0.803
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I 0.803
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I 0.803
MLOC_43041 Hordeum vulgare MLOC_43041 I 0.802
Cla018124 Citrullus lanatus Cla018124 I 0.801
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I 0.801
Cucsa.307230 Cucumis sativus Cucsa.307230 I 0.801
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I 0.801
Lus10023165.g Linum usitatissimum Lus10023165.g I 0.801
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I 0.799
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I 0.798
Pm030172 Prunus mume Pm030172 I 0.798
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I 0.798
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I 0.798
MDP0000137561 Malus domestica MDP0000137561 I 0.798
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I 0.797
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I 0.795
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I 0.795
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I 0.795
OB03G45870 Oryza brachyantha OB03G45870 I 0.794
Ca_14618 Cicer arietinum Ca_14618 I 0.794
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I 0.794
MTR_7g100590 Medicago truncatula MTR_7g100590 I 0.791
Ca_12010 Cicer arietinum Ca_12010 I 0.791
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D 0.791
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I 0.791
Cucsa.051660 Cucumis sativus Cucsa.051660 I 0.790
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I 0.790
BGIOSGA013826 Oryza indica BGIOSGA013826 I 0.789
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I 0.789
OMERI03G35820 Oryza meridionalis OMERI03G35820 I 0.789
ONIVA03G40610 Oryza nivara ONIVA03G40610 I 0.789
OPUNC03G36030 Oryza punctata OPUNC03G36030 I 0.789
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I 0.789
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I 0.788
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I 0.788
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I 0.786
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I 0.786
GLYMA19G36200 Glycine max GLYMA19G36200 I 0.785
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I 0.785
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I 0.785
RAP2.7 Arabidopsis thaliana AT2G28550 D 0.784
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I 0.784
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I 0.784
Carubv10025387m.g Capsella rubella Carubv10025387m.g I 0.784
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I 0.784
Bo4g070350 Brassica oleracea Bo4g070350 I 0.783
Bra011939 Brassica rapa Bra011939 I 0.783
Lus10019905.g Linum usitatissimum Lus10019905.g I 0.783
Lus10026477.g Linum usitatissimum Lus10026477.g I 0.783
MTR_4g061200 Medicago truncatula MTR_4g061200 I 0.782
BGIOSGA025426 Oryza indica BGIOSGA025426 I 0.781
MLOC_43575 Hordeum vulgare MLOC_43575 I 0.781
OBART07G08110 Oryza barthii OBART07G08110 I 0.781
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I 0.781
OLONG_021321 Oryza longistaminata OLONG_021321 I 0.781
OMERI07G06850 Oryza meridionalis OMERI07G06850 I 0.781
ONIVA03G25220 Oryza nivara ONIVA03G25220 I 0.781
OPUNC07G07690 Oryza punctata OPUNC07G07690 I 0.781
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I 0.781
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I 0.781
OS07G0235800 Oryza sativa OS07G0235800 I 0.781
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I 0.781
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I 0.781
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I 0.780
GRMZM2G176175 Zea mays GRMZM2G176175 I 0.780
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I 0.780
Sb02g007000 Sorghum bicolor Sb02g007000 I 0.780
Si029636m.g Setaria italica Si029636m.g I 0.780
mgf005133m Mimulus guttatus mgf005133m I 0.780
mgf010466m Mimulus guttatus mgf010466m I 0.780
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I 0.780
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I 0.779
Lus10004990.g Linum usitatissimum Lus10004990.g I 0.779
GLYMA15G04930 Glycine max GLYMA15G04930 I 0.778
GRMZM5G862109 Zea mays GRMZM5G862109 I 0.778
Sb01g003400 Sorghum bicolor Sb01g003400 I 0.778
Si036068m.g Setaria italica Si036068m.g I 0.778
Pavir.J23520 Panicum virgatum Pavir.J23520 I 0.778
Pavir.J41060 Panicum virgatum Pavir.J41060 I 0.778
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I 0.777
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I 0.777
MDP0000163645 Malus domestica MDP0000163645 I 0.776
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I 0.774
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I 0.774
Lus10018124.g Linum usitatissimum Lus10018124.g I 0.774
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I 0.769
Lus10041595.g Linum usitatissimum Lus10041595.g I 0.768
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I 0.767
Bo7g064000 Brassica oleracea Bo7g064000 I 0.765
Bra012139 Brassica rapa Bra012139 I 0.765
TOE3 Arabidopsis thaliana AT5G67180 I 0.764
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I 0.764
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I 0.764
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I 0.764
Carubv10026667m.g Capsella rubella Carubv10026667m.g I 0.764
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I 0.761
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I 0.760
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I 0.760
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I 0.760
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I 0.759
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I 0.758
GRMZM2G416701 Zea mays GRMZM2G416701 I 0.749
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I 0.748
Si006371m.g Setaria italica Si006371m.g I 0.747
OS03G0818800 Oryza sativa OS03G0818800 I 0.746
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I 0.745
LPERR05G01420 Leersia perrieri LPERR05G01420 I 0.742
OLONG_026757 Oryza longistaminata OLONG_026757 I 0.742
Lus10036141.g Linum usitatissimum Lus10036141.g I 0.742
Cla020549 Citrullus lanatus Cla020549 I 0.737
Cucsa.065640 Cucumis sativus Cucsa.065640 I 0.728
Cla018549 Citrullus lanatus Cla018549 I 0.724
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I 0.694
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I 0.683