TCM_008214 (Theobroma cacao)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TCM_008214 T223894_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00 		Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432 		0.668 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX99522 Homeodomain 26 82
EOX99523 Homeodomain 26 82
EOX99524 Homeodomain 26 82
EOX99525 Homeodomain 1 35
EOX99526 Homeodomain 26 82

Links

Other Homeodomain family TFs
Other Theobroma cacao TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30169.m006395 Ricinus communis 30169.m006395 I 0.000
AC234203.1_FG011 Zea mays AC234203.1_FG011 I 0.000
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.000
AMTR_s00119p00117410 Amborella trichopoda AMTR_s00119p00117410 I 0.000
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I 0.000
BGIOSGA029545 Oryza indica BGIOSGA029545 I 0.000
Bo6g087550 Brassica oleracea Bo6g087550 I 0.000
Bo6g118030 Brassica oleracea Bo6g118030 I 0.000
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I 0.000
Bra008110 Brassica rapa Bra008110 I 0.000
Bra015970 Brassica rapa Bra015970 I 0.000
BRADI3G39970 Brachypodium distachyon BRADI3G39970 I 0.000
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I 0.000
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I 0.000
Cagra.6016s0001 Capsella grandiflora Cagra.6016s0001 I 0.000
Carubv10020043m.g Capsella rubella Carubv10020043m.g I 0.000
Carubv10022879m.g Capsella rubella Carubv10022879m.g I 0.000
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.000
cassava30700.valid.m1 Manihot esculenta cassava30700.valid.m1 I 0.000
cassava3620.m1 Manihot esculenta cassava3620.m1 I 0.000
Ca_02669 Cicer arietinum Ca_02669 I 0.000
chr2.CM0031.190.nc Lotus japonicus chr2.CM0031.190.nc I 0.000
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.000
Ciclev10000608m.g Citrus clementina Ciclev10000608m.g I 0.000
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.000
Cucsa.142750 Cucumis sativus Cucsa.142750 I 0.000
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.000
EIL1 Arabidopsis lyrata fgenesh2_kg.4__646__AT2G27050.1 I 0.000
EIL3 Arabidopsis thaliana AT1G73730 D 0.000
EIL3 Arabidopsis lyrata scaffold_202309.1 I 0.000
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.000
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.000
Eucgr.G02632 Eucalyptus grandis Eucgr.G02632 I 0.000
Eucgr.J00631 Eucalyptus grandis Eucgr.J00631 I 0.000
evm.TU.supercontig_103.60 Carica papaya evm.TU.supercontig_103.60 I 0.000
e_gw1.11.194.1 Physcomitrella patens e_gw1.11.194.1 I 0.000
e_gw1.87.73.1 Physcomitrella patens e_gw1.87.73.1 D 0.000
F775_17920 Aegilops tauschii F775_17920 I 0.000
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.000
GLYMA02G44220 Glycine max GLYMA02G44220 I 0.000
GLYMA13G03660 Glycine max GLYMA13G03660 I 0.000
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.000
GLYMA14G04550 Glycine max GLYMA14G04550 I 0.000
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.000
Gorai.003G140600 Gossypium raimondii Gorai.003G140600 I 0.000
Gorai.004G227800 Gossypium raimondii Gorai.004G227800 I 0.000
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I 0.000
Gorai.009G105400 Gossypium raimondii Gorai.009G105400 I 0.000
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I 0.000
Gorai.013G250300 Gossypium raimondii Gorai.013G250300 I 0.000
GRMZM2G006752 Zea mays GRMZM2G006752 I 0.000
GSMUA_Achr3G11160_001 Musa acuminata GSMUA_Achr3G11160_001 I 0.000
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I 0.000
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I 0.000
LPERR08G16890 Leersia perrieri LPERR08G16890 I 0.000
LPERR09G10870 Leersia perrieri LPERR09G10870 I 0.000
Lus10031245.g Linum usitatissimum Lus10031245.g I 0.000
Lus10031817.g Linum usitatissimum Lus10031817.g I 0.000
MDP0000490180 Malus domestica MDP0000490180 I 0.000
MDP0000562585 Malus domestica MDP0000562585 I 0.000
MDP0000565880 Malus domestica MDP0000565880 I 0.000
MLOC_10315 Hordeum vulgare MLOC_10315 I 0.000
MLOC_10823 Hordeum vulgare MLOC_10823 I 0.000
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.000
MTR_3g078770 Medicago truncatula MTR_3g078770 I 0.000
OB08G26880 Oryza brachyantha OB08G26880 I 0.000
OB09G21280 Oryza brachyantha OB09G21280 I 0.000
OBART08G19960 Oryza barthii OBART08G19960 I 0.000
OBART09G14750 Oryza barthii OBART09G14750 I 0.000
OGLUM08G21190 Oryza glumaepatula OGLUM08G21190 I 0.000
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I 0.000
OMERI08G16770 Oryza meridionalis OMERI08G16770 I 0.000
OMERI09G11470 Oryza meridionalis OMERI09G11470 I 0.000
ONIVA08G17420 Oryza nivara ONIVA08G17420 I 0.000
ONIVA08G22530 Oryza nivara ONIVA08G22530 I 0.000
OPUNC08G18080 Oryza punctata OPUNC08G18080 I 0.000
OPUNC09G13210 Oryza punctata OPUNC09G13210 I 0.000
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.000
orange1.1g009144m.g Citrus sinensis orange1.1g009144m.g I 0.000
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I 0.000
ORUFI08G22370 Oryza rufipogon ORUFI08G22370 I 0.000
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I 0.000
OS08G0508700 Oryza sativa OS08G0508700 I 0.000
OS09G0490200 Oryza sativa OS09G0490200 D 0.000
Pavir.Fa00424 Panicum virgatum Pavir.Fa00424 I 0.000
Pavir.Fb01951 Panicum virgatum Pavir.Fb01951 I 0.000
Pavir.J02229 Panicum virgatum Pavir.J02229 I 0.000
Pavir.J14329 Panicum virgatum Pavir.J14329 I 0.000
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I 0.000
PGSC0003DMG400005915 Solanum tuberosum PGSC0003DMG400005915 I 0.000
PGSC0003DMG400008712 Solanum tuberosum PGSC0003DMG400008712 I 0.000
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I 0.000
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.000
PK19114.1 Cannabis sativa PK19114.1 I 0.000
Pm028171 Prunus mume Pm028171 I 0.000
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.000
POPTR_0001s05370 Populus trichocarpa POPTR_0001s05370 I 0.000
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.000
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.000
PRUPE_ppa003550mg Prunus persica PRUPE_ppa003550mg I 0.000
Q9ZWK1_TOBAC Nicotiana tabacum Q9ZWK1_TOBAC D 0.000
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.000
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.000
Sb02g028390 Sorghum bicolor Sb02g028390 I 0.000
Sb07g027790 Sorghum bicolor Sb07g027790 I 0.000
SELMODRAFT_112063 Selaginella moellendorffii SELMODRAFT_112063 I 0.000
SELMODRAFT_136229 Selaginella moellendorffii SELMODRAFT_136229 I 0.000
Si013426m.g Setaria italica Si013426m.g I 0.000
Si029259m.g Setaria italica Si029259m.g I 0.000
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I 0.000
Solyc01g009170.2 Solanum lycopersicum Solyc01g009170.2 I 0.000
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.000
Solyc06g073720.1 Solanum lycopersicum Solyc06g073720.1 I 0.000
TCM_040510 Theobroma cacao TCM_040510 I 0.000
TCM_042022 Theobroma cacao TCM_042022 I 0.000
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I 0.000
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I 0.000
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I 0.000
Traes_7AS_34D476D5D1 Triticum aestivum Traes_7AS_34D476D5D1 I 0.000
Traes_7BS_733347AC0 Triticum aestivum Traes_7BS_733347AC0 I 0.000
Traes_7DS_3673F1C73 Triticum aestivum Traes_7DS_3673F1C73 I 0.000
TRIUR3_28079 Triticum urartu TRIUR3_28079 I 0.000