Pm002704 (Prunus mume)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pm002704 T283455_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.794 0.879
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.688 0.764
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.685 0.771
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.682 0.736
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.682 0.736
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm002704 Myb 59 105
Pm002704 Myb 111 157
Pm002704 Myb 163 208

Links

Other Myb/SANT family TFs
Other Prunus mume TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27613.m000642 Ricinus communis 27613.m000642 N 0.000
29949.m000124 Ricinus communis 29949.m000124 N 0.000
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.000
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.000
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.000
Bo5g079990 Brassica oleracea Bo5g079990 N 0.000
Bo6g022330 Brassica oleracea Bo6g022330 N 0.000
Bo9g009240 Brassica oleracea Bo9g009240 N 0.000
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.000
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.000
Bra018860 Brassica rapa Bra018860 N 0.000
Bra026077 Brassica rapa Bra026077 N 0.000
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.000
Cagra.7055s0004 Capsella grandiflora Cagra.7055s0004 N 0.000
Carubv10008830m.g Capsella rubella Carubv10008830m.g N 0.000
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.000
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.000
cassava34106.m1 Manihot esculenta cassava34106.m1 N 0.000
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.000
cassava8885.m1 Manihot esculenta cassava8885.m1 N 0.000
Ca_09786 Cicer arietinum Ca_09786 N 0.000
Ca_13855 Cicer arietinum Ca_13855 N 0.000
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N 0.000
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.000
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.000
CIGR2 Oryza sativa OS07G0583600 N 0.000
Cla001429 Citrullus lanatus Cla001429 N 0.000
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.000
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.000
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.000
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.000
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.000
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.000
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.000
GLYMA02G46730 Glycine max GLYMA02G46730 N 0.000
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.000
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.000
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.000
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.000
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.000
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.000
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.000
Lus10003772.g Linum usitatissimum Lus10003772.g N 0.000
Lus10006369.g Linum usitatissimum Lus10006369.g N 0.000
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.000
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.000
MDP0000152670 Malus domestica MDP0000152670 N 0.000
MDP0000205236 Malus domestica MDP0000205236 N 0.000
MDP0000284679 Malus domestica MDP0000284679 N 0.000
MDP0000804652 Malus domestica MDP0000804652 N 0.000
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.000
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.000
PAT1 Arabidopsis thaliana AT5G48150 N 0.000
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.000
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.000
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.000
PK15082.1 Cannabis sativa PK15082.1 N 0.000
Pm012019 Prunus mume Pm012019 N 0.000
Pm015021 Prunus mume Pm015021 N 0.000
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.000
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.000
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.000
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.000
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.000
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.000
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.000
SCL5 Arabidopsis lyrata fgenesh2_kg.1__4145__AT1G50600.1 N 0.000
SCL5 Arabidopsis thaliana AT1G50600 N 0.000
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.000
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.000
TCM_002319 Theobroma cacao TCM_002319 N 0.000
TCM_030733 Theobroma cacao TCM_030733 N 0.000
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.000
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.000