POPTR_0001s10410 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0001s10410 T332115_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.510 0.688
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.510 0.688
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s10410.1 Sox 180 248
POPTR_0001s10410.1 Sox 299 365
POPTR_0001s10410.1 Sox 424 492

Links

Other Sox family TFs
Other Populus trichocarpa TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I 0.567
AMTR_s00093p00057150 Amborella trichopoda AMTR_s00093p00057150 N 0.435
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.503
BGIOSGA006746 Oryza indica BGIOSGA006746 I 0.420
Bo1g037180 Brassica oleracea Bo1g037180 I 0.513
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.495
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.530
Bra013731 Brassica rapa Bra013731 I 0.513
Bra035256 Brassica rapa Bra035256 I 0.462
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.435
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.528
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.496
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.505
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.503
Ca_05811 Cicer arietinum Ca_05811 I 0.447
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.504
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.514
Cla011101 Citrullus lanatus Cla011101 I 0.554
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.503
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.515
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.530
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.539
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.560
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.533
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.511
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.546
GSMUA_Achr10G14500_001 Musa acuminata GSMUA_Achr10G14500_001 N 0.465
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.515
HMGB13 Arabidopsis thaliana AT4G11080 D 0.510
HMGB6 Arabidopsis thaliana AT4G23800 I 0.530
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.567
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.550
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.513
MDP0000268093 Malus domestica MDP0000268093 I 0.527
mgf015439m Mimulus guttatus mgf015439m I 0.481
MTR_8g099305 Medicago truncatula MTR_8g099305 I 0.477
OB02G19930 Oryza brachyantha OB02G19930 N 0.427
OBART02G11160 Oryza barthii OBART02G11160 I 0.420
OGLUM02G11100 Oryza glumaepatula OGLUM02G11100 I 0.420
ONIVA02G12490 Oryza nivara ONIVA02G12490 I 0.420
OPUNC02G09900 Oryza punctata OPUNC02G09900 I 0.427
ORUFI02G11130 Oryza rufipogon ORUFI02G11130 I 0.420
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.425
PDK_20s1767201g001 Phoenix dactylifera PDK_20s1767201g001 N 0.417
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.529
PK10992.1 Cannabis sativa PK10992.1 I 0.466
Pm024077 Prunus mume Pm024077 I 0.584
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.620
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.584
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.694
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.531
TCM_016416 Theobroma cacao TCM_016416 I 0.587
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I 0.536
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.498
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.568