Pavir.J14065 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.J14065 T345016_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.972 0.593
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.972 0.593
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.972 0.593
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.972 0.593
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.970 0.674
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.969 0.593
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.959 0.570
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.958 0.452
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.957 0.526
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.957 0.526
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.957 0.444
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.957 0.444
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.957 0.444
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.957 0.444
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.957 0.452
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.956 0.489
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.956 0.437
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.956 0.459
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.956 0.496
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.955 0.444
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.955 0.556
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.954 0.459
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.954 0.459
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.954 0.459
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.953 0.437
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.953 0.437
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.949 0.474
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.949 0.437
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.941 0.437
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.939 0.407
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.939 0.400
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.938 0.430
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.938 0.430
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.907 0.459
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.907 0.459
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J14065.1.p TCP 63 235

Links

Other TCP family TFs
Other Panicum virgatum TFs

657 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29729.m002292 Ricinus communis 29729.m002292 I
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I
Aquca_013_00679 Aquilegia coerulea Aquca_013_00679 I
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I
AT2G40350 Arabidopsis thaliana AT2G40350 I
BGIOSGA002846 Oryza indica BGIOSGA002846 I
Bo4g190040 Brassica oleracea Bo4g190040 I
Bo6g086320 Brassica oleracea Bo6g086320 I
Bo6g119660 Brassica oleracea Bo6g119660 I
Bo9g155940 Brassica oleracea Bo9g155940 I
Bo9g177130 Brassica oleracea Bo9g177130 I
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I
Bostr.23794s0027 Boechera stricta Bostr.23794s0027 I
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I
Bostr.3288s0201 Boechera stricta Bostr.3288s0201 I
Bra002159 Brassica rapa Bra002159 I
Bra003752 Brassica rapa Bra003752 I
Bra015840 Brassica rapa Bra015840 I
Bra017011 Brassica rapa Bra017011 I
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I
Cagra.0799s0022 Capsella grandiflora Cagra.0799s0022 I
Carubv10020960m.g Capsella rubella Carubv10020960m.g I
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I
Ca_12446 Cicer arietinum Ca_12446 I
Ca_22585 Cicer arietinum Ca_22585 I
Cla001755 Citrullus lanatus Cla001755 I
Cla006713 Citrullus lanatus Cla006713 I
Cucsa.119440 Cucumis sativus Cucsa.119440 I
Cucsa.136780 Cucumis sativus Cucsa.136780 I
DREB2A Oryza sativa OS01G0165000 I
DREB2C Arabidopsis lyrata scaffold_402826.1 I
DREB2D Arabidopsis thaliana AT1G75490 D
DREB2G Arabidopsis thaliana AT5G18450 D
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I
F775_05774 Aegilops tauschii F775_05774 I
fgenesh2_kg.2__1828__AT1G75490.1 Arabidopsis lyrata fgenesh2_kg.2__1828__AT1G75490.1 I
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I
gene16710-v1.0-hybrid Fragaria vesca gene16710-v1.0-hybrid I
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I
GLYMA02G42960 Glycine max GLYMA02G42960 I
GLYMA06G45680 Glycine max GLYMA06G45680 I
GLYMA12G11150 Glycine max GLYMA12G11150 I
GLYMA12G32400 Glycine max GLYMA12G32400 I
GLYMA13G38030 Glycine max GLYMA13G38030 I
GLYMA14G06080 Glycine max GLYMA14G06080 I
Gorai.007G271900 Gossypium raimondii Gorai.007G271900 I
Gorai.009G271400 Gossypium raimondii Gorai.009G271400 I
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I
GRMZM2G028386 Zea mays GRMZM2G028386 I
GRMZM2G156737 Zea mays GRMZM2G156737 I
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I
GSMUA_Achr3G00320_001 Musa acuminata GSMUA_Achr3G00320_001 I
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I
LPERR01G03760 Leersia perrieri LPERR01G03760 I
Lus10003581.g Linum usitatissimum Lus10003581.g I
Lus10012226.g Linum usitatissimum Lus10012226.g I
Lus10023633.g Linum usitatissimum Lus10023633.g I
Lus10034902.g Linum usitatissimum Lus10034902.g I
MDP0000147009 Malus domestica MDP0000147009 I
MDP0000153866 Malus domestica MDP0000153866 I
MDP0000165880 Malus domestica MDP0000165880 I
MDP0000290585 Malus domestica MDP0000290585 I
MDP0000446783 Malus domestica MDP0000446783 I
MDP0000880312 Malus domestica MDP0000880312 I
mgf007881m Mimulus guttatus mgf007881m I
mgf017629m Mimulus guttatus mgf017629m I
mgf024545m Mimulus guttatus mgf024545m I
MLOC_66686 Hordeum vulgare MLOC_66686 I
MTR_5g083330 Medicago truncatula MTR_5g083330 I
MTR_5g083340 Medicago truncatula MTR_5g083340 I
OB01G13930 Oryza brachyantha OB01G13930 I
OBART01G04210 Oryza barthii OBART01G04210 I
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I
OLONG_014228 Oryza longistaminata OLONG_014228 I
OMERI01G04110 Oryza meridionalis OMERI01G04110 I
ONIVA01G04630 Oryza nivara ONIVA01G04630 I
OPUNC01G03970 Oryza punctata OPUNC01G03970 I
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I
Pavir.Ca01725 Panicum virgatum Pavir.Ca01725 I
Pavir.Cb01298 Panicum virgatum Pavir.Cb01298 I
Pavir.Ea00429 Panicum virgatum Pavir.Ea00429 I
Pavir.J37967 Panicum virgatum Pavir.J37967 I
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I
PK07402.1 Cannabis sativa PK07402.1 D
PK07829.1 Cannabis sativa PK07829.1 I
Pm003634 Prunus mume Pm003634 I
Pm015262 Prunus mume Pm015262 I
Pm018989 Prunus mume Pm018989 I
POPTR_0006s10510 Populus trichocarpa POPTR_0006s10510 I
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I
SapurV1A.0620s0100 Salix purpurea SapurV1A.0620s0100 I
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I
Sb03g004980 Sorghum bicolor Sb03g004980 I
Sb07g023575 Sorghum bicolor Sb07g023575 I
Sb09g016150 Sorghum bicolor Sb09g016150 I
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I
Si002067m.g Setaria italica Si002067m.g I
Si022619m.g Setaria italica Si022619m.g I
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I
TCM_026121 Theobroma cacao TCM_026121 I
TCM_043275 Theobroma cacao TCM_043275 I
TCM_043302 Theobroma cacao TCM_043302 I
TCM_043306 Theobroma cacao TCM_043306 I
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I
Thhalv10019142m.g Eutrema salsugineum Thhalv10019142m.g I
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I
TRIUR3_17973 Triticum urartu TRIUR3_17973 I
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I
VIT_18s0001g13320 Vitis vinifera VIT_18s0001g13320 I