Carubv10001721m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10001721m.g T049331_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.914 0.961
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.914 0.961
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.873 0.882
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10001721m bHLH 196 246

Links

Other bHLH family TFs
Other Capsella rubella TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I
BXY_0690000 Bursaphelenchus xylophilus BXY_0690000 I
CBN28290 Caenorhabditis brenneri CBN28290 I
CBN23838 Caenorhabditis brenneri CBN23838 I
CBN21486 Caenorhabditis brenneri CBN21486 I
CBN13569 Caenorhabditis brenneri CBN13569 I
CBN12210 Caenorhabditis brenneri CBN12210 I
CBG06601 Caenorhabditis briggsae CBG06601 I
CBG20729 Caenorhabditis briggsae CBG20729 I
CBG06599 Caenorhabditis briggsae CBG06599 I
CBG06609 Caenorhabditis briggsae CBG06609 I
CBG06611 Caenorhabditis briggsae CBG06611 I
CBG22870 Caenorhabditis briggsae CBG22870 I
CBG09320 Caenorhabditis briggsae CBG09320 I
CBG20727 Caenorhabditis briggsae CBG20727 I
CBG14515 Caenorhabditis briggsae CBG14515 I
CBG09567 Caenorhabditis briggsae CBG09567 I
nhr-142 Caenorhabditis elegans WBGene00018430 D
nhr-178 Caenorhabditis elegans WBGene00017510 I
nhr-232 Caenorhabditis elegans WBGene00012494 D
nhr-231 Caenorhabditis elegans WBGene00012449 I
nhr-213 Caenorhabditis elegans WBGene00011520 I
nhr-170 Caenorhabditis elegans WBGene00008309 I
nhr-102 Caenorhabditis elegans WBGene00003692 I
nhr-45 Caenorhabditis elegans WBGene00003635 I
nhr-54 Caenorhabditis elegans WBGene00003644 I
CJA02156 Caenorhabditis japonica CJA02156 I
CJA28065 Caenorhabditis japonica CJA28065 I
CJA09697 Caenorhabditis japonica CJA09697 I
CRE31070 Caenorhabditis remanei CRE31070 I
CRE30948 Caenorhabditis remanei CRE30948 I
CRE18430 Caenorhabditis remanei CRE18430 I
CRE15675 Caenorhabditis remanei CRE15675 I
CRE15644 Caenorhabditis remanei CRE15644 I
CRE08691 Caenorhabditis remanei CRE08691 I
CRE00301 Caenorhabditis remanei CRE00301 I
EVEC_0000956701 Enterobius vermicularis EVEC_0000956701 I
GPLIN_000282900 Globodera pallida GPLIN_000282900 I
HCOI00483700 Haemonchus contortus HCOI00483700 I
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I
maker-nMf.1.1.scaf01765-snap-gene-0.13 Meloidogyne floridensis maker-nMf.1.1.scaf01765-snap-gene-0.13 I
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I
Minc14668 Meloidogyne incognita Minc14668 I
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I
PEQ_0000560101 Parascaris equorum PEQ_0000560101 I
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I
PPA14290 Pristionchus pacificus PPA14290 I
L596_g14596 Steinernema carpocapsae L596_g14596 I
L596_g14532 Steinernema carpocapsae L596_g14532 I
L596_g14586 Steinernema carpocapsae L596_g14586 I
L596_g14588 Steinernema carpocapsae L596_g14588 I
L596_g14589 Steinernema carpocapsae L596_g14589 I
L596_g14590 Steinernema carpocapsae L596_g14590 I
L889_g6696 Steinernema feltiae L889_g6696 I
L889_g6695 Steinernema feltiae L889_g6695 I
L889_g6694 Steinernema feltiae L889_g6694 I
L889_g6692 Steinernema feltiae L889_g6692 I
L893_g18992 Steinernema glaseri L893_g18992 I
L893_g18995 Steinernema glaseri L893_g18995 N
L898_g12799 Steinernema monticolum L898_g12799 I
L898_g3512 Steinernema monticolum L898_g3512 I
L898_g3514 Steinernema monticolum L898_g3514 I
L898_g3515 Steinernema monticolum L898_g3515 I
L892_g2780 Steinernema scapterisci L892_g2780 I
L892_g2782 Steinernema scapterisci L892_g2782 I
L892_g2781 Steinernema scapterisci L892_g2781 I
L892_g14834 Steinernema scapterisci L892_g14834 N
L892_g14824 Steinernema scapterisci L892_g14824 N
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I