Cla022104 (Citrullus lanatus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cla022104 T195886_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.842 0.917
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.822 0.917
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.822 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla022104 GATA 24 59

Links

Other GATA family TFs
Other Citrullus lanatus TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_03572 Aegilops tauschii F775_03572 N
AMTR_s00010p00148880 Amborella trichopoda AMTR_s00010p00148880 N
RGA1 Arabidopsis lyrata fgenesh2_kg.5__65__AT2G01570.1 N
GAI Arabidopsis lyrata fgenesh2_kg.1__1634__AT1G14920.1 N
GAI Arabidopsis thaliana AT1G14920 N
RGA Arabidopsis thaliana AT2G01570 N
Bostr.7128s0107 Boechera stricta Bostr.7128s0107 N
Bostr.7903s0021 Boechera stricta Bostr.7903s0021 N
Bo7g078550 Brassica oleracea Bo7g078550 N
Bra024875 Brassica rapa Bra024875 N
PK14700.1 Cannabis sativa PK14700.1 N
Cagra.2235s0013 Capsella grandiflora Cagra.2235s0013 N
Cagra.3501s0003 Capsella grandiflora Cagra.3501s0003 N
Carubv10018534m.g Capsella rubella Carubv10018534m.g N
Carubv10008833m.g Capsella rubella Carubv10008833m.g N
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I
evm.TU.supercontig_2.240 Carica papaya evm.TU.supercontig_2.240 I
Ca_13295 Cicer arietinum Ca_13295 I
Ca_05046 Cicer arietinum Ca_05046 N
Cla020062 Citrullus lanatus Cla020062 N
Cla003996 Citrullus lanatus Cla003996 N
Ciclev10011367m.g Citrus clementina Ciclev10011367m.g N
Ciclev10017466m.g Citrus clementina Ciclev10017466m.g N
orange1.1g008153m.g Citrus sinensis orange1.1g008153m.g N
orange1.1g043131m.g Citrus sinensis orange1.1g043131m.g N
Cucsa.006260 Cucumis sativus Cucsa.006260 N
Cucsa.280310 Cucumis sativus Cucsa.280310 N
Eucgr.G02163 Eucalyptus grandis Eucgr.G02163 N
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I
Thhalv10005482m.g Eutrema salsugineum Thhalv10005482m.g N
Thhalv10007323m.g Eutrema salsugineum Thhalv10007323m.g N
GLYMA18G04500 Glycine max GLYMA18G04500 I
GLYMA11G33720 Glycine max GLYMA11G33720 I
GLYMA08G10140 Glycine max GLYMA08G10140 N
GLYMA05G27190 Glycine max GLYMA05G27190 N
Gorai.001G089400 Gossypium raimondii Gorai.001G089400 I
Gorai.002G177000 Gossypium raimondii Gorai.002G177000 N
Lus10017626.g Linum usitatissimum Lus10017626.g N
Lus10033583.g Linum usitatissimum Lus10033583.g N
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N
MDP0000669451 Malus domestica MDP0000669451 I
MDP0000237978 Malus domestica MDP0000237978 N
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I
cassava14484.m1 Manihot esculenta cassava14484.m1 N
cassava15077.m1 Manihot esculenta cassava15077.m1 N
MTR_3g065980 Medicago truncatula MTR_3g065980 N
mgf008289m Mimulus guttatus mgf008289m N
mgf025772m Mimulus guttatus mgf025772m N
OBART03G31370 Oryza barthii OBART03G31370 N
ORGLA03G0290200 Oryza glaberrima ORGLA03G0290200 N
SLR1 Oryza indica BGIOSGA013420 N
OMERI03G27970 Oryza meridionalis OMERI03G27970 N
ONIVA03G32670 Oryza nivara ONIVA03G32670 N
SLR1 Oryza sativa OS03G0707600 N
POPTR_0010s12080 Populus trichocarpa POPTR_0010s12080 N
POPTR_0008s13090 Populus trichocarpa POPTR_0008s13090 N
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I
Pm006304 Prunus mume Pm006304 N
Pm014329 Prunus mume Pm014329 I
PRUPE_ppa005944mg Prunus persica PRUPE_ppa005944mg N
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I
29692.m000540 Ricinus communis 29692.m000540 N
28677.m000055 Ricinus communis 28677.m000055 N
SapurV1A.0015s0210 Salix purpurea SapurV1A.0015s0210 N
SapurV1A.0102s0220 Salix purpurea SapurV1A.0102s0220 N
SapurV1A.0405s0090 Salix purpurea SapurV1A.0405s0090 N
Solyc11g011260.1 Solanum lycopersicum Solyc11g011260.1 N
PGSC0003DMG400015692 Solanum tuberosum PGSC0003DMG400015692 N
TCM_010965 Theobroma cacao TCM_010965 N
TCM_019165 Theobroma cacao TCM_019165 N
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I
GAI1 Vitis vinifera VIT_01s0011g05260 N
GRMZM2G144744 Zea mays GRMZM2G144744 N