lin54 (Oryzias latipes)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 ENSORLG00000001906 T345315_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.933
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.933
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.893
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.893
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.840
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.840
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.827
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.827
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.680
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.667
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.667
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.667
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.667
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.667
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.600
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.600
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.600
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.600
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.600
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.587
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.587
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.587
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.573
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.560
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.560
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.547
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.547
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.547
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000002372 TCR/CxC 526 562
ENSORLP00000002372 TCR/CxC 600 637

Links

Other TCR/CxC family TFs
Other Oryzias latipes TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32962 Aegilops tauschii F775_32962 I
AMTR_s00035p00205430 Amborella trichopoda AMTR_s00035p00205430 I
AMTR_s00058p00216470 Amborella trichopoda AMTR_s00058p00216470 I
Aquca_007_00714 Aquilegia coerulea Aquca_007_00714 I
Aquca_010_00628 Aquilegia coerulea Aquca_010_00628 I
Aquca_027_00133 Aquilegia coerulea Aquca_027_00133 I
TOE3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8002628 I
AP2 Arabidopsis lyrata fgenesh2_kg.7__332__AT4G36920.1 I
RAP2.7 Arabidopsis thaliana AT2G28550 D
AP2 Arabidopsis thaliana AT4G36920 I
TOE3 Arabidopsis thaliana AT5G67180 I
Bostr.0568s0140 Boechera stricta Bostr.0568s0140 I
Bostr.7867s1579 Boechera stricta Bostr.7867s1579 I
BRADI1G30337 Brachypodium distachyon BRADI1G30337 I
BRADI1G53650 Brachypodium distachyon BRADI1G53650 I
BRADI2G37800 Brachypodium distachyon BRADI2G37800 I
BRADI5G24100 Brachypodium distachyon BRADI5G24100 I
Bo1g004960 Brassica oleracea Bo1g004960 I
Bo4g070350 Brassica oleracea Bo4g070350 I
Bo7g064000 Brassica oleracea Bo7g064000 I
Bo7g118400 Brassica oleracea Bo7g118400 I
Bra011741 Brassica rapa Bra011741 I
Bra011939 Brassica rapa Bra011939 I
Bra012139 Brassica rapa Bra012139 I
Bra017809 Brassica rapa Bra017809 I
PK02403.1 Cannabis sativa PK02403.1 I
PK07183.1 Cannabis sativa PK07183.1 I
PK14490.1 Cannabis sativa PK14490.1 I
Cagra.0342s0004 Capsella grandiflora Cagra.0342s0004 I
Cagra.1809s0003 Capsella grandiflora Cagra.1809s0003 I
Cagra.4909s0048 Capsella grandiflora Cagra.4909s0048 I
Carubv10004818m.g Capsella rubella Carubv10004818m.g I
Carubv10025387m.g Capsella rubella Carubv10025387m.g I
Carubv10026667m.g Capsella rubella Carubv10026667m.g I
evm.TU.supercontig_114.55 Carica papaya evm.TU.supercontig_114.55 I
evm.TU.supercontig_139.43 Carica papaya evm.TU.supercontig_139.43 I
evm.TU.supercontig_55.116 Carica papaya evm.TU.supercontig_55.116 I
Ca_02499 Cicer arietinum Ca_02499 I
Ca_09295 Cicer arietinum Ca_09295 I
Ca_12010 Cicer arietinum Ca_12010 I
Ca_14618 Cicer arietinum Ca_14618 I
Cla000716 Citrullus lanatus Cla000716 I
Cla018124 Citrullus lanatus Cla018124 I
Cla018549 Citrullus lanatus Cla018549 I
Cla020549 Citrullus lanatus Cla020549 I
Ciclev10011588m.g Citrus clementina Ciclev10011588m.g I
Ciclev10025364m.g Citrus clementina Ciclev10025364m.g I
Ciclev10028259m.g Citrus clementina Ciclev10028259m.g I
Ciclev10031306m.g Citrus clementina Ciclev10031306m.g I
orange1.1g009943m.g Citrus sinensis orange1.1g009943m.g I
orange1.1g010454m.g Citrus sinensis orange1.1g010454m.g I
orange1.1g010763m.g Citrus sinensis orange1.1g010763m.g I
Cucsa.051660 Cucumis sativus Cucsa.051660 I
Cucsa.065640 Cucumis sativus Cucsa.065640 I
Cucsa.102550 Cucumis sativus Cucsa.102550 I
Cucsa.307230 Cucumis sativus Cucsa.307230 I
Cucsa.367290 Cucumis sativus Cucsa.367290 I
Eucgr.B02453 Eucalyptus grandis Eucgr.B02453 I
Eucgr.I00892 Eucalyptus grandis Eucgr.I00892 I
Eucgr.J02113 Eucalyptus grandis Eucgr.J02113 I
Thhalv10004742m.g Eutrema salsugineum Thhalv10004742m.g I
Thhalv10016626m.g Eutrema salsugineum Thhalv10016626m.g I
Thhalv10025268m.g Eutrema salsugineum Thhalv10025268m.g I
gene18102-v1.0-hybrid Fragaria vesca gene18102-v1.0-hybrid I
gene23876-v1.0-hybrid Fragaria vesca gene23876-v1.0-hybrid I
gene25394-v1.0-hybrid Fragaria vesca gene25394-v1.0-hybrid I
GLYMA01G39520 Glycine max GLYMA01G39520 I
GLYMA03G33470 Glycine max GLYMA03G33470 I
GLYMA05G18041 Glycine max GLYMA05G18041 I
GLYMA11G15650 Glycine max GLYMA11G15650 I
GLYMA12G07800 Glycine max GLYMA12G07800 I
GLYMA13G40470 Glycine max GLYMA13G40470 I
GLYMA15G04930 Glycine max GLYMA15G04930 I
GLYMA17G18640 Glycine max GLYMA17G18640 I
GLYMA19G36200 Glycine max GLYMA19G36200 I
Gorai.002G251500 Gossypium raimondii Gorai.002G251500 I
Gorai.003G025900 Gossypium raimondii Gorai.003G025900 I
Gorai.004G002100 Gossypium raimondii Gorai.004G002100 I
Gorai.007G215900 Gossypium raimondii Gorai.007G215900 I
Gorai.008G077800 Gossypium raimondii Gorai.008G077800 I
Gorai.009G104200 Gossypium raimondii Gorai.009G104200 I
Gorai.011G106200 Gossypium raimondii Gorai.011G106200 I
MLOC_43041 Hordeum vulgare MLOC_43041 I
MLOC_43575 Hordeum vulgare MLOC_43575 I
LPERR05G01420 Leersia perrieri LPERR05G01420 I
LPERR06G18460 Leersia perrieri LPERR06G18460 I
Lus10004990.g Linum usitatissimum Lus10004990.g I
Lus10009374.g Linum usitatissimum Lus10009374.g I
Lus10015055.g Linum usitatissimum Lus10015055.g I
Lus10018124.g Linum usitatissimum Lus10018124.g I
Lus10019331.g Linum usitatissimum Lus10019331.g I
Lus10019905.g Linum usitatissimum Lus10019905.g I
Lus10023165.g Linum usitatissimum Lus10023165.g I
Lus10026477.g Linum usitatissimum Lus10026477.g I
Lus10036141.g Linum usitatissimum Lus10036141.g I
Lus10041595.g Linum usitatissimum Lus10041595.g I
chr1.CM0033.300.nc Lotus japonicus chr1.CM0033.300.nc I
chr3.LjT05P05.30.nd Lotus japonicus chr3.LjT05P05.30.nd I
LjSGA_005424.1 Lotus japonicus LjSGA_005424.1 I
LjT39B13.80.nc Lotus japonicus LjT39B13.80.nc I
MDP0000137561 Malus domestica MDP0000137561 I
MDP0000163645 Malus domestica MDP0000163645 I
MDP0000181606 Malus domestica MDP0000181606 I
MDP0000200319 Malus domestica MDP0000200319 I
cassava12358.valid.m1 Manihot esculenta cassava12358.valid.m1 I
cassava13566.valid.m1 Manihot esculenta cassava13566.valid.m1 I
cassava13884.valid.m1 Manihot esculenta cassava13884.valid.m1 I
cassava2301.valid.m1 Manihot esculenta cassava2301.valid.m1 I
cassava24954.valid.m1 Manihot esculenta cassava24954.valid.m1 I
MTR_2g093060 Medicago truncatula MTR_2g093060 I
MTR_4g061200 Medicago truncatula MTR_4g061200 I
MTR_4g094868 Medicago truncatula MTR_4g094868 I
MTR_5g016810 Medicago truncatula MTR_5g016810 I
MTR_7g100590 Medicago truncatula MTR_7g100590 I
mgf005133m Mimulus guttatus mgf005133m I
mgf009315m Mimulus guttatus mgf009315m I
mgf010466m Mimulus guttatus mgf010466m I
mgf021945m Mimulus guttatus mgf021945m I
GSMUA_Achr10G03230_001 Musa acuminata GSMUA_Achr10G03230_001 I
GSMUA_Achr11G23870_001 Musa acuminata GSMUA_Achr11G23870_001 I
GSMUA_Achr1G09830_001 Musa acuminata GSMUA_Achr1G09830_001 I
GSMUA_Achr1G26080_001 Musa acuminata GSMUA_Achr1G26080_001 I
GSMUA_Achr3G13180_001 Musa acuminata GSMUA_Achr3G13180_001 I
GSMUA_Achr3G28340_001 Musa acuminata GSMUA_Achr3G28340_001 I
GSMUA_Achr4G06100_001 Musa acuminata GSMUA_Achr4G06100_001 I
GSMUA_Achr5G07270_001 Musa acuminata GSMUA_Achr5G07270_001 I
GSMUA_Achr5G29290_001 Musa acuminata GSMUA_Achr5G29290_001 I
GSMUA_Achr6G33140_001 Musa acuminata GSMUA_Achr6G33140_001 I
GSMUA_Achr6G34420_001 Musa acuminata GSMUA_Achr6G34420_001 I
GSMUA_Achr8G01980_001 Musa acuminata GSMUA_Achr8G01980_001 I
GSMUA_Achr8G18550_001 Musa acuminata GSMUA_Achr8G18550_001 I
GSMUA_Achr8G21030_001 Musa acuminata GSMUA_Achr8G21030_001 I
GSMUA_Achr9G03060_001 Musa acuminata GSMUA_Achr9G03060_001 I
GSMUA_Achr9G04270_001 Musa acuminata GSMUA_Achr9G04270_001 I
GSMUA_AchrUn_randomG10320_001 Musa acuminata GSMUA_AchrUn_randomG10320_001 I
GSMUA_AchrUn_randomG16200_001 Musa acuminata GSMUA_AchrUn_randomG16200_001 I
OBART07G08110 Oryza barthii OBART07G08110 I
OB03G45870 Oryza brachyantha OB03G45870 I
OB06G29960 Oryza brachyantha OB06G29960 I
ORGLA04G0237800 Oryza glaberrima ORGLA04G0237800 I
ORGLA05G0015400 Oryza glaberrima ORGLA05G0015400 I
ORGLA07G0068600 Oryza glaberrima ORGLA07G0068600 I
OGLUM03G38790 Oryza glumaepatula OGLUM03G38790 I
OGLUM04G27380 Oryza glumaepatula OGLUM04G27380 I
OGLUM06G23380 Oryza glumaepatula OGLUM06G23380 I
OGLUM07G07330 Oryza glumaepatula OGLUM07G07330 I
BGIOSGA013826 Oryza indica BGIOSGA013826 I
BGIOSGA017250 Oryza indica BGIOSGA017250 I
BGIOSGA018911 Oryza indica BGIOSGA018911 I
BGIOSGA020813 Oryza indica BGIOSGA020813 I
BGIOSGA025426 Oryza indica BGIOSGA025426 I
OLONG_021321 Oryza longistaminata OLONG_021321 I
OLONG_026757 Oryza longistaminata OLONG_026757 I
OMERI03G35820 Oryza meridionalis OMERI03G35820 I
OMERI04G22900 Oryza meridionalis OMERI04G22900 I
OMERI06G22190 Oryza meridionalis OMERI06G22190 I
OMERI07G06850 Oryza meridionalis OMERI07G06850 I
ONIVA03G25220 Oryza nivara ONIVA03G25220 I
ONIVA03G40610 Oryza nivara ONIVA03G40610 I
ONIVA04G25920 Oryza nivara ONIVA04G25920 I
ONIVA06G26190 Oryza nivara ONIVA06G26190 I
OPUNC03G36030 Oryza punctata OPUNC03G36030 I
OPUNC04G24930 Oryza punctata OPUNC04G24930 I
OPUNC05G01480 Oryza punctata OPUNC05G01480 I
OPUNC06G19990 Oryza punctata OPUNC06G19990 I
OPUNC07G07690 Oryza punctata OPUNC07G07690 I
ORUFI03G40640 Oryza rufipogon ORUFI03G40640 I
ORUFI04G29120 Oryza rufipogon ORUFI04G29120 I
ORUFI06G23930 Oryza rufipogon ORUFI06G23930 I
ORUFI07G08180 Oryza rufipogon ORUFI07G08180 I
OS03G0818800 Oryza sativa OS03G0818800 I
OS05G0121600 Oryza sativa OS05G0121600 I
OS07G0235800 Oryza sativa OS07G0235800 I
Pavir.Ba03394 Panicum virgatum Pavir.Ba03394 I
Pavir.Da00466 Panicum virgatum Pavir.Da00466 I
Pavir.J11433 Panicum virgatum Pavir.J11433 I
Pavir.J23348 Panicum virgatum Pavir.J23348 I
Pavir.J23520 Panicum virgatum Pavir.J23520 I
Pavir.J27340 Panicum virgatum Pavir.J27340 I
Pavir.J37968 Panicum virgatum Pavir.J37968 I
Pavir.J41060 Panicum virgatum Pavir.J41060 I
Q9XHD3_PETHY Petunia x hybrida Q9XHD3_PETHY D
Q9XHD4_PETHY Petunia x hybrida Q9XHD4_PETHY D
PDK_20s1506731g001 Phoenix dactylifera PDK_20s1506731g001 I
POPTR_0005s18400 Populus trichocarpa POPTR_0005s18400 I
POPTR_0006s13460 Populus trichocarpa POPTR_0006s13460 I
POPTR_0007s10780 Populus trichocarpa POPTR_0007s10780 I
POPTR_0008s04490 Populus trichocarpa POPTR_0008s04490 I
POPTR_0010s22320 Populus trichocarpa POPTR_0010s22320 I
POPTR_0016s08530 Populus trichocarpa POPTR_0016s08530 I
Pm000974 Prunus mume Pm000974 I
Pm002492 Prunus mume Pm002492 I
Pm030172 Prunus mume Pm030172 I
PRUPE_ppa003783mg Prunus persica PRUPE_ppa003783mg I
PRUPE_ppa005230mg Prunus persica PRUPE_ppa005230mg I
28752.m000339 Ricinus communis 28752.m000339 I
29169.m000017 Ricinus communis 29169.m000017 I
29805.m001494 Ricinus communis 29805.m001494 I
SapurV1A.0038s0220 Salix purpurea SapurV1A.0038s0220 I
SapurV1A.0209s0320 Salix purpurea SapurV1A.0209s0320 I
SapurV1A.0247s0170 Salix purpurea SapurV1A.0247s0170 I
SapurV1A.0689s0070 Salix purpurea SapurV1A.0689s0070 I
SapurV1A.1340s0010 Salix purpurea SapurV1A.1340s0010 I
Si006371m.g Setaria italica Si006371m.g I
Si012635m.g Setaria italica Si012635m.g I
Si025305m.g Setaria italica Si025305m.g I
Si029636m.g Setaria italica Si029636m.g I
Si036068m.g Setaria italica Si036068m.g I
Solyc02g064960.2 Solanum lycopersicum Solyc02g064960.2 I
Solyc02g093150.2 Solanum lycopersicum Solyc02g093150.2 I
Solyc03g044300.2 Solanum lycopersicum Solyc03g044300.2 I
Solyc06g075510.2 Solanum lycopersicum Solyc06g075510.2 I
Solyc10g084340.1 Solanum lycopersicum Solyc10g084340.1 I
Solyc11g072600.1 Solanum lycopersicum Solyc11g072600.1 I
PGSC0003DMG400004006 Solanum tuberosum PGSC0003DMG400004006 I
PGSC0003DMG400006482 Solanum tuberosum PGSC0003DMG400006482 I
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I
PGSC0003DMG400025390 Solanum tuberosum PGSC0003DMG400025390 I
PGSC0003DMG400025479 Solanum tuberosum PGSC0003DMG400025479 I
PGSC0003DMG400027904 Solanum tuberosum PGSC0003DMG400027904 I
Sb01g003400 Sorghum bicolor Sb01g003400 I
Sb02g007000 Sorghum bicolor Sb02g007000 I
Sb06g030670 Sorghum bicolor Sb06g030670 I
Sb10g025053 Sorghum bicolor Sb10g025053 I
TCM_000665 Theobroma cacao TCM_000665 I
TCM_022077 Theobroma cacao TCM_022077 I
TCM_042000 Theobroma cacao TCM_042000 I
Traes_1AS_90F3120F8 Triticum aestivum Traes_1AS_90F3120F8 I
Traes_1BS_E68807072 Triticum aestivum Traes_1BS_E68807072 I
Traes_7DL_7B0ABD21E Triticum aestivum Traes_7DL_7B0ABD21E I
RAP2.7 Vitis vinifera VIT_06s0004g03590 I
TOE3 Vitis vinifera VIT_07s0031g00220 I
VIT_08s0040g03180 Vitis vinifera VIT_08s0040g03180 I
VIT_13s0019g03550 Vitis vinifera VIT_13s0019g03550 I
GRMZM2G160730 Zea mays GRMZM2G160730 I
GRMZM2G174784 Zea mays GRMZM2G174784 I
GRMZM2G176175 Zea mays GRMZM2G176175 I
GRMZM2G416701 Zea mays GRMZM2G416701 I
GRMZM2G700665 Zea mays GRMZM2G700665 I
GRMZM5G862109 Zea mays GRMZM5G862109 I
P93632_MAIZE Zea mays P93632_MAIZE D