Bostr.26959s0035 (Boechera stricta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Bostr.26959s0035 T007633_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.754 0.860
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.754 0.860
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.754 0.860
ERF119
M01093_2.00 		Arabidopsis thaliana
NNNGCCGNN
NNCGGCNNN		 PBM
Lambert et al.(2019)
pTH11551 		0.726 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.26959s0035.1.p AP2 113 163

Links

Other AP2 family TFs
Other Boechera stricta TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.780
ERF118 Arabidopsis thaliana AT1G68550 D 0.754
TCM_011811 Theobroma cacao TCM_011811 I 0.753
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.753
Bra036360 Brassica rapa Bra036360 I 0.738
scaffold_500470.1 Arabidopsis lyrata scaffold_500470.1 I 0.737
Cagra.6197s0021 Capsella grandiflora Cagra.6197s0021 I 0.737
Carubv10017565m.g Capsella rubella Carubv10017565m.g I 0.737
Thhalv10004526m.g Eutrema salsugineum Thhalv10004526m.g I 0.736
Bo7g082250 Brassica oleracea Bo7g082250 I 0.735
Bra025170 Brassica rapa Bra025170 I 0.735
Bostr.0556s0264 Boechera stricta Bostr.0556s0264 I 0.732
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.730
ERF119 Arabidopsis thaliana AT3G25890 D 0.726
Carubv10021988m.g Capsella rubella Carubv10021988m.g I 0.697
Bo2g138790 Brassica oleracea Bo2g138790 I 0.697
Cagra.3364s0010 Capsella grandiflora Cagra.3364s0010 I 0.697
Lus10021678.g Linum usitatissimum Lus10021678.g I 0.696
Lus10034316.g Linum usitatissimum Lus10034316.g I 0.695
Lus10035018.g Linum usitatissimum Lus10035018.g N 0.690
evm.TU.supercontig_1.178 Carica papaya evm.TU.supercontig_1.178 I 0.688
Lus10041456.g Linum usitatissimum Lus10041456.g N 0.687
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.683
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.683
GLYMA08G15830 Glycine max GLYMA08G15830 I 0.679
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.679