Ciclev10009361m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10009361m.g T007981_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.745 0.872
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.745 0.872
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.745 0.872
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.734 0.851
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.734 0.851
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.734 0.851
PK17878.1
M01099_2.00 		Cannabis sativa
CGCCGYCR
YGRCGGCG		 PBM
Lambert et al.(2019)
pTH10133 		0.710 0.809
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.678 0.702
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.678 0.702
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.678 0.702
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10009361m AP2 35 86

Links

Other AP2 family TFs
Other Citrus clementina TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.821
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.818
PK25211.1 Cannabis sativa PK25211.1 I 0.817
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.814
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.812
29640.m000403 Ricinus communis 29640.m000403 I 0.812
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.811
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.810
mgf007166m Mimulus guttatus mgf007166m I 0.808
MDP0000839828 Malus domestica MDP0000839828 I 0.808
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.808
Pm014953 Prunus mume Pm014953 I 0.808
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.808
mgf016282m Mimulus guttatus mgf016282m I 0.808
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.807
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.807
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.807
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.806
MDP0000542633 Malus domestica MDP0000542633 I 0.802
MDP0000629527 Malus domestica MDP0000629527 I 0.802
Pm011907 Prunus mume Pm011907 I 0.802
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.797
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.795
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.794
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.794
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.789
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.786
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.785
MDP0000744693 Malus domestica MDP0000744693 I 0.781
MDP0000243113 Malus domestica MDP0000243113 I 0.781
Bo6g022410 Brassica oleracea Bo6g022410 I 0.780
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.779
Cla005423 Citrullus lanatus Cla005423 I 0.778
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.777
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.777
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.773
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.772
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.772
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.770
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.769
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.769
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.768
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.763
Cla003319 Citrullus lanatus Cla003319 I 0.762
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.762
TCM_030804 Theobroma cacao TCM_030804 I 0.758
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.758
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.757
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.756
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.753
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.753
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.752
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.751
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.750
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.750
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.749
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.749
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.749
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.749
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.749
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.748
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.747
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.746
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.746
Lus10031526.g Linum usitatissimum Lus10031526.g I 0.746
ERF3 Arabidopsis thaliana AT1G50640 D 0.745
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.742
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.742
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.742
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.742
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.742
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.741
Cla013723 Citrullus lanatus Cla013723 I 0.741
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.739
Bra018864 Brassica rapa Bra018864 I 0.739
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.738
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.734
ERF7 Arabidopsis thaliana AT3G20310 D 0.734
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.733
chr1.CM0375.170.nd Lotus japonicus chr1.CM0375.170.nd I 0.733
Ca_17824 Cicer arietinum Ca_17824 I 0.731
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.731
ERF3 Arabidopsis lyrata fgenesh2_kg.1__4150__AT1G50640.1 I 0.730
Bostr.26675s0113 Boechera stricta Bostr.26675s0113 I 0.730
GSMUA_Achr6G01440_001 Musa acuminata GSMUA_Achr6G01440_001 I 0.729
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.728
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.726
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.726
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.726
VIT_14s0081g00520 Vitis vinifera VIT_14s0081g00520 I 0.724
PK02998.1 Cannabis sativa PK02998.1 I 0.724
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.723
Ca_12205 Cicer arietinum Ca_12205 I 0.723
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.722
Sb03g037085 Sorghum bicolor Sb03g037085 I 0.722
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.721
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.720
Pavir.Eb03165 Panicum virgatum Pavir.Eb03165 I 0.719
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.719
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.719
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I 0.717
Pm020210 Prunus mume Pm020210 I 0.717
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I 0.717
gene21403-v1.0-hybrid Fragaria vesca gene21403-v1.0-hybrid I 0.716
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I 0.715
SELMODRAFT_49950 Selaginella moellendorffii SELMODRAFT_49950 I 0.713
Bra001784 Brassica rapa Bra001784 I 0.713
SELMODRAFT_73142 Selaginella moellendorffii SELMODRAFT_73142 I 0.713
Bo3g074840 Brassica oleracea Bo3g074840 I 0.713
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.713
gene29735-v1.0-hybrid Fragaria vesca gene29735-v1.0-hybrid I 0.712
cassava42971.valid.m1 Manihot esculenta cassava42971.valid.m1 I 0.710
30190.m011323 Ricinus communis 30190.m011323 I 0.710
cassava4486.m1 Manihot esculenta cassava4486.m1 I 0.710
MTR_2g014300 Medicago truncatula MTR_2g014300 I 0.710
Ciclev10016982m.g Citrus clementina Ciclev10016982m.g I 0.710
Gorai.011G029700 Gossypium raimondii Gorai.011G029700 I 0.710
mgf023367m Mimulus guttatus mgf023367m I 0.710
evm.TU.supercontig_27.18 Carica papaya evm.TU.supercontig_27.18 I 0.710
GLYMA13G31010 Glycine max GLYMA13G31010 I 0.710
Pm010083 Prunus mume Pm010083 I 0.710
Cucsa.126860 Cucumis sativus Cucsa.126860 I 0.710
GLYMA15G08360 Glycine max GLYMA15G08360 I 0.710
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.710
orange1.1g030994m.g Citrus sinensis orange1.1g030994m.g I 0.710
ERF12 Vitis vinifera VIT_10s0003g00130 I 0.710
SapurV1A.0032s0450 Salix purpurea SapurV1A.0032s0450 I 0.710
POPTR_0011s05570 Populus trichocarpa POPTR_0011s05570 I 0.710
Cla020002 Citrullus lanatus Cla020002 I 0.710
TCM_029823 Theobroma cacao TCM_029823 I 0.710
PK17878.1 Cannabis sativa PK17878.1 D 0.710
Solyc02g077840.1 Solanum lycopersicum Solyc02g077840.1 I 0.710
Ca_00326 Cicer arietinum Ca_00326 I 0.710
PRUPE_ppa012385mg Prunus persica PRUPE_ppa012385mg I 0.710
SapurV1A.0012s0570 Salix purpurea SapurV1A.0012s0570 I 0.710
POPTR_0004s04700 Populus trichocarpa POPTR_0004s04700 I 0.710
PGSC0003DMG400029713 Solanum tuberosum PGSC0003DMG400029713 I 0.710
chr6.CM0114.130.nc Lotus japonicus chr6.CM0114.130.nc I 0.710
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I 0.708
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I 0.707
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I 0.707
MDP0000457509 Malus domestica MDP0000457509 I 0.706
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I 0.705
BRADI2G52380 Brachypodium distachyon BRADI2G52380 I 0.704
Si003053m.g Setaria italica Si003053m.g I 0.704
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I 0.704
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I 0.704
TRAES3BF075600040CFD_g Triticum aestivum TRAES3BF075600040CFD_g I 0.704
Carubv10014475m.g Capsella rubella Carubv10014475m.g I 0.704
GLYMA18G10290 Glycine max GLYMA18G10290 I 0.703
GRMZM2G020150 Zea mays GRMZM2G020150 I 0.703
MLOC_66843 Hordeum vulgare MLOC_66843 I 0.703
SELMODRAFT_430375 Selaginella moellendorffii SELMODRAFT_430375 I 0.702
SELMODRAFT_443461 Selaginella moellendorffii SELMODRAFT_443461 I 0.702
GRMZM2G174347 Zea mays GRMZM2G174347 I 0.701
GLYMA08G43300 Glycine max GLYMA08G43300 I 0.701
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.701
ERF12 Arabidopsis thaliana AT1G28360 I 0.700
ERF12 Arabidopsis lyrata fgenesh2_kg.1__3004__AT1G28360.1 I 0.700
Bra030094 Brassica rapa Bra030094 I 0.700
Bo7g048190 Brassica oleracea Bo7g048190 I 0.700
Bo5g055840 Brassica oleracea Bo5g055840 I 0.700
Bra010881 Brassica rapa Bra010881 I 0.700
Bra032898 Brassica rapa Bra032898 I 0.700
Bo3g143340 Brassica oleracea Bo3g143340 I 0.700
Thhalv10009947m.g Eutrema salsugineum Thhalv10009947m.g I 0.700
Cagra.1822s0023 Capsella grandiflora Cagra.1822s0023 I 0.700
Carubv10011585m.g Capsella rubella Carubv10011585m.g I 0.700
Bostr.15697s0156 Boechera stricta Bostr.15697s0156 I 0.700
AMTR_s00077p00176570 Amborella trichopoda AMTR_s00077p00176570 I 0.699
MDP0000236605 Malus domestica MDP0000236605 I 0.696
Pavir.Fb01486 Panicum virgatum Pavir.Fb01486 I 0.696
Pavir.Fb00952 Panicum virgatum Pavir.Fb00952 I 0.696
MDP0000310904 Malus domestica MDP0000310904 I 0.696
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I 0.695
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.695
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I 0.694
Pavir.Fa01730 Panicum virgatum Pavir.Fa01730 I 0.693
Pavir.Ea03148 Panicum virgatum Pavir.Ea03148 I 0.691
Ca_20544 Cicer arietinum Ca_20544 I 0.691
Bra038261 Brassica rapa Bra038261 I 0.690
Bo1g108970 Brassica oleracea Bo1g108970 I 0.690
Lus10035076.g Linum usitatissimum Lus10035076.g I 0.689
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.689
Bra035792 Brassica rapa Bra035792 I 0.688
ATERF-7 Arabidopsis lyrata fgenesh2_kg.3__2255__AT3G20310.1 I 0.688
Bo5g109800 Brassica oleracea Bo5g109800 I 0.688
estExt_Genemark1.C_100079 Coccomyxa subellipsoidea C169 estExt_Genemark1.C_100079 I 0.686
estExt_fgeneshCV_pg.C_120242 Chlorella vulgaris estExt_fgeneshCV_pg.C_120242 I 0.686
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.686
fgenesh1_pg.scaffold_6000034 Physcomitrella patens fgenesh1_pg.scaffold_6000034 I 0.685
Lus10043182.g Linum usitatissimum Lus10043182.g I 0.684
SELMODRAFT_19889 Selaginella moellendorffii SELMODRAFT_19889 I 0.684
SELMODRAFT_59974 Selaginella moellendorffii SELMODRAFT_59974 I 0.684
gw1.105.71.1 Physcomitrella patens gw1.105.71.1 I 0.684
Eucgr.K00734 Eucalyptus grandis Eucgr.K00734 I 0.684
Ca_22534 Cicer arietinum Ca_22534 I 0.683
SapurV1A.1325s0040 Salix purpurea SapurV1A.1325s0040 I 0.683
F775_20810 Aegilops tauschii F775_20810 I 0.683
POPTR_0001s40770 Populus trichocarpa POPTR_0001s40770 I 0.683
POPTR_0011s11620 Populus trichocarpa POPTR_0011s11620 I 0.683
orange1.1g028454m.g Citrus sinensis orange1.1g028454m.g I 0.682
27904.m000217 Ricinus communis 27904.m000217 I 0.682
TCM_031608 Theobroma cacao TCM_031608 I 0.682
Bo3g066710 Brassica oleracea Bo3g066710 I 0.682
Ciclev10009484m.g Citrus clementina Ciclev10009484m.g I 0.682
cassava37846.valid.m1 Manihot esculenta cassava37846.valid.m1 I 0.682
GLYMA12G26836 Glycine max GLYMA12G26836 I 0.682
Gorai.009G375700 Gossypium raimondii Gorai.009G375700 I 0.682
GSMUA_Achr9G11480_001 Musa acuminata GSMUA_Achr9G11480_001 I 0.682
Bostr.28625s0184 Boechera stricta Bostr.28625s0184 I 0.682
evm.TU.supercontig_131.83 Carica papaya evm.TU.supercontig_131.83 I 0.682
Bra001588 Brassica rapa Bra001588 I 0.682
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.682
Lus10017907.g Linum usitatissimum Lus10017907.g I 0.681
PK23186.1 Cannabis sativa PK23186.1 I 0.681
Si036615m.g Setaria italica Si036615m.g I 0.681
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.681
e_gw1.5.258.1 Physcomitrella patens e_gw1.5.258.1 I 0.680
Bra039658 Brassica rapa Bra039658 I 0.680
SELMODRAFT_439762 Selaginella moellendorffii SELMODRAFT_439762 I 0.679
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.679
SELMODRAFT_402810 Selaginella moellendorffii SELMODRAFT_402810 I 0.679
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.678
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.678
ERF13 Arabidopsis thaliana AT2G44840 D 0.678
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.678
Bra004873 Brassica rapa Bra004873 I 0.678
Bo4g195220 Brassica oleracea Bo4g195220 I 0.678
Bra037630 Brassica rapa Bra037630 I 0.678
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.678
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.678
Bo4g024140 Brassica oleracea Bo4g024140 I 0.678
Bra023748 Brassica rapa Bra023748 I 0.677
Bo1g102220 Brassica oleracea Bo1g102220 I 0.677
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.677