Cla005423 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla005423 T006422_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.718 0.851
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.718 0.851
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.718 0.851
ERF7
M01617_2.00 		Arabidopsis thaliana
NGCCGNMNNN
NNNKNCGGCN		 PBM
Weirauch et al.(2014)
pTH7606 		0.705 0.809
ERF7
M06620_2.00 		Arabidopsis thaliana
YHNHYNYYDYCDCCGCCGYCD
HGRCGGCGGHGRHRRNRDNDR		 Dap-seq
OMalley et al.(2016)
ERF7_col_a 		0.705 0.809
ERF7
M06621_2.00 		Arabidopsis thaliana
NNNHNNHNHHDSCGCCGCCRH
DYGGCGGCGSHDDNDNNDNNN		 Dap-seq
OMalley et al.(2016)
ERF7_colamp_a 		0.705 0.809
ERF13
M01615_2.00 		Arabidopsis thaliana
VGCCGSCD
HGSCGGCB		 PBM
Weirauch et al.(2014)
pTH7283 		0.690 0.702
ERF13
M06612_2.00 		Arabidopsis thaliana
NHDBMGCCGCCDYHD
HDRHGGCGGCKVHDN		 Dap-seq
OMalley et al.(2016)
ERF13_colamp_a 		0.690 0.702
ERF13
M06613_2.00 		Arabidopsis thaliana
HDBMGCCGCCDYHDN
NHDRHGGCGGCKVHD		 Dap-seq
OMalley et al.(2016)
ERF13_col_b 		0.690 0.702
OS05G0497200
M01636_2.00 		Oryza sativa
CGSCGCCR
YGGCGSCG		 PBM
Weirauch et al.(2014)
pTH8640 		0.686 0.745
PK17878.1
M01099_2.00 		Cannabis sativa
CGCCGYCR
YGRCGGCG		 PBM
Lambert et al.(2019)
pTH10133 		0.684 0.787
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005423 AP2 24 75

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.802
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.790
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.783
29640.m000403 Ricinus communis 29640.m000403 I 0.783
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.779
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.779
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.779
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.778
PK25211.1 Cannabis sativa PK25211.1 I 0.778
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.778
Cla003319 Citrullus lanatus Cla003319 I 0.777
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.777
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.775
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.770
mgf016282m Mimulus guttatus mgf016282m I 0.769
Pm014953 Prunus mume Pm014953 I 0.769
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.769
MDP0000839828 Malus domestica MDP0000839828 I 0.769
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.769
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.768
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.768
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.768
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.768
mgf007166m Mimulus guttatus mgf007166m I 0.768
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.765
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.764
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.764
Pm011907 Prunus mume Pm011907 I 0.763
MDP0000629527 Malus domestica MDP0000629527 I 0.763
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.763
MDP0000542633 Malus domestica MDP0000542633 I 0.763
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.763
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.758
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.758
Lus10031526.g Linum usitatissimum Lus10031526.g I 0.756
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.756
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.748
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.748
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.747
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.746
Cucsa.139820 Cucumis sativus Cucsa.139820 I 0.742
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.742
MDP0000243113 Malus domestica MDP0000243113 I 0.741
MDP0000744693 Malus domestica MDP0000744693 I 0.741
Bo6g022410 Brassica oleracea Bo6g022410 I 0.741
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.738
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.738
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.734
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I 0.734
Cla013723 Citrullus lanatus Cla013723 I 0.732
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.728
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I 0.726
GLYMA02G46340 Glycine max GLYMA02G46340 I 0.725
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.721
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.721
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I 0.720
ERF3 Arabidopsis thaliana AT1G50640 D 0.718
MDP0000457509 Malus domestica MDP0000457509 I 0.718
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I 0.718
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I 0.715
TCM_030804 Theobroma cacao TCM_030804 I 0.715
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.714
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.714
chr1.CM0375.170.nd Lotus japonicus chr1.CM0375.170.nd I 0.714
LPERR02G05920 Leersia perrieri LPERR02G05920 I 0.711
cassava34729.m1 Manihot esculenta cassava34729.m1 I 0.711
OPUNC02G05940 Oryza punctata OPUNC02G05940 I 0.711
GRMZM2G146028 Zea mays GRMZM2G146028 I 0.710
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I 0.710
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I 0.710
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I 0.710
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I 0.710
Sb04g006080 Sorghum bicolor Sb04g006080 I 0.710
GRMZM2G079653 Zea mays GRMZM2G079653 I 0.709
GLYMA14G02360 Glycine max GLYMA14G02360 I 0.708
GLYMA03G31640 Glycine max GLYMA03G31640 I 0.708
MDP0000310904 Malus domestica MDP0000310904 I 0.708
MDP0000236605 Malus domestica MDP0000236605 I 0.708
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I 0.707
ERF7 Arabidopsis thaliana AT3G20310 D 0.705
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I 0.705
PK02998.1 Cannabis sativa PK02998.1 I 0.704
VIT_14s0081g00520 Vitis vinifera VIT_14s0081g00520 I 0.704
ERF3 Arabidopsis lyrata fgenesh2_kg.1__4150__AT1G50640.1 I 0.704
SELMODRAFT_73142 Selaginella moellendorffii SELMODRAFT_73142 I 0.704
SELMODRAFT_49950 Selaginella moellendorffii SELMODRAFT_49950 I 0.704
Bostr.26675s0113 Boechera stricta Bostr.26675s0113 I 0.704
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I 0.703
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I 0.702
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I 0.702
Ca_17824 Cicer arietinum Ca_17824 I 0.702
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I 0.702
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I 0.702
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I 0.702
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I 0.702
OMERI02G07840 Oryza meridionalis OMERI02G07840 I 0.702
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I 0.701
Bra018864 Brassica rapa Bra018864 I 0.700
Ca_12205 Cicer arietinum Ca_12205 I 0.699
MTR_5g085100 Medicago truncatula MTR_5g085100 I 0.699
Sb03g037085 Sorghum bicolor Sb03g037085 I 0.698
Pavir.Eb03165 Panicum virgatum Pavir.Eb03165 I 0.698
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I 0.698
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I 0.695
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I 0.695
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I 0.695
PK23186.1 Cannabis sativa PK23186.1 I 0.695
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I 0.694
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I 0.694
SELMODRAFT_430375 Selaginella moellendorffii SELMODRAFT_430375 I 0.693
Pm020210 Prunus mume Pm020210 I 0.693
SELMODRAFT_443461 Selaginella moellendorffii SELMODRAFT_443461 I 0.693
gene21403-v1.0-hybrid Fragaria vesca gene21403-v1.0-hybrid I 0.693
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I 0.693
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I 0.692
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I 0.692
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I 0.691
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I 0.691
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I 0.690
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I 0.690
GSMUA_Achr6G01440_001 Musa acuminata GSMUA_Achr6G01440_001 I 0.690
Bra004873 Brassica rapa Bra004873 I 0.690
ATERF13 Arabidopsis lyrata scaffold_403422.1 I 0.690
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I 0.690
Bo4g195220 Brassica oleracea Bo4g195220 I 0.690
Bo4g024140 Brassica oleracea Bo4g024140 I 0.690
Carubv10023967m.g Capsella rubella Carubv10023967m.g I 0.690
ERF13 Arabidopsis thaliana AT2G44840 D 0.690
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I 0.690
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I 0.690
Bra037630 Brassica rapa Bra037630 I 0.690
Cucsa.255330 Cucumis sativus Cucsa.255330 I 0.689
MTR_8g006815 Medicago truncatula MTR_8g006815 I 0.689
30174.m008759 Ricinus communis 30174.m008759 I 0.689
GRMZM2G020016 Zea mays GRMZM2G020016 I 0.688
Lus10043182.g Linum usitatissimum Lus10043182.g I 0.688
ORGLA05G0187500 Oryza glaberrima ORGLA05G0187500 I 0.686
LPERR05G17470 Leersia perrieri LPERR05G17470 I 0.686
ORUFI05G22840 Oryza rufipogon ORUFI05G22840 I 0.686
OS05G0497200 Oryza sativa OS05G0497200 D 0.686
OPUNC05G19220 Oryza punctata OPUNC05G19220 I 0.686
OGLUM05G22780 Oryza glumaepatula OGLUM05G22780 I 0.686
ONIVA05G22260 Oryza nivara ONIVA05G22260 I 0.686
OMERI05G19480 Oryza meridionalis OMERI05G19480 I 0.686
BGIOSGA017797 Oryza indica BGIOSGA017797 I 0.686
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I 0.685
Traes_5BL_FBC7AF288 Triticum aestivum Traes_5BL_FBC7AF288 I 0.685
Bra014925 Brassica rapa Bra014925 I 0.685
Bo7g040810 Brassica oleracea Bo7g040810 I 0.685
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I 0.684
chr6.CM0114.130.nc Lotus japonicus chr6.CM0114.130.nc I 0.684
PK17878.1 Cannabis sativa PK17878.1 D 0.684
ERF12 Vitis vinifera VIT_10s0003g00130 I 0.684
orange1.1g030994m.g Citrus sinensis orange1.1g030994m.g I 0.684
PRUPE_ppa012385mg Prunus persica PRUPE_ppa012385mg I 0.684
Ca_00326 Cicer arietinum Ca_00326 I 0.684
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I 0.684
Lus10016212.g Linum usitatissimum Lus10016212.g I 0.684
Gorai.011G029700 Gossypium raimondii Gorai.011G029700 I 0.684
TCM_029823 Theobroma cacao TCM_029823 I 0.684
Solyc02g077840.1 Solanum lycopersicum Solyc02g077840.1 I 0.684
evm.TU.supercontig_27.18 Carica papaya evm.TU.supercontig_27.18 I 0.684
mgf023367m Mimulus guttatus mgf023367m I 0.684
30190.m011323 Ricinus communis 30190.m011323 I 0.684
POPTR_0011s05570 Populus trichocarpa POPTR_0011s05570 I 0.684
GLYMA15G08360 Glycine max GLYMA15G08360 I 0.684
GLYMA13G31010 Glycine max GLYMA13G31010 I 0.684
cassava42971.valid.m1 Manihot esculenta cassava42971.valid.m1 I 0.684
Cucsa.126860 Cucumis sativus Cucsa.126860 I 0.684
cassava4486.m1 Manihot esculenta cassava4486.m1 I 0.684
POPTR_0004s04700 Populus trichocarpa POPTR_0004s04700 I 0.684
PGSC0003DMG400029713 Solanum tuberosum PGSC0003DMG400029713 I 0.684
SapurV1A.0032s0450 Salix purpurea SapurV1A.0032s0450 I 0.684
Pm010083 Prunus mume Pm010083 I 0.684
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I 0.684
Cla020002 Citrullus lanatus Cla020002 I 0.684
Ciclev10016982m.g Citrus clementina Ciclev10016982m.g I 0.684
MTR_2g014300 Medicago truncatula MTR_2g014300 I 0.684
SapurV1A.0012s0570 Salix purpurea SapurV1A.0012s0570 I 0.684
Pavir.Da00220 Panicum virgatum Pavir.Da00220 I 0.683
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I 0.683
MTR_5g085070 Medicago truncatula MTR_5g085070 I 0.683
gene29735-v1.0-hybrid Fragaria vesca gene29735-v1.0-hybrid I 0.683
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I 0.683
cassava19883.m1 Manihot esculenta cassava19883.m1 I 0.683
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I 0.683
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I 0.683
Pm017696 Prunus mume Pm017696 I 0.683
TCM_005707 Theobroma cacao TCM_005707 I 0.683
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I 0.682
GLYMA06G44430 Glycine max GLYMA06G44430 I 0.682
30174.m008755 Ricinus communis 30174.m008755 I 0.682
SELMODRAFT_72880 Selaginella moellendorffii SELMODRAFT_72880 I 0.682
SELMODRAFT_73144 Selaginella moellendorffii SELMODRAFT_73144 I 0.682
Bra023748 Brassica rapa Bra023748 I 0.682
Bo1g102220 Brassica oleracea Bo1g102220 I 0.682
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I 0.681
MTR_1g074310 Medicago truncatula MTR_1g074310 I 0.681
TRAES3BF075600040CFD_g Triticum aestivum TRAES3BF075600040CFD_g I 0.680
Si003053m.g Setaria italica Si003053m.g I 0.680
TCM_005706 Theobroma cacao TCM_005706 I 0.680
GLYMA12G13315 Glycine max GLYMA12G13315 I 0.680
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I 0.680
BRADI2G52380 Brachypodium distachyon BRADI2G52380 I 0.680
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I 0.680
MLOC_66843 Hordeum vulgare MLOC_66843 I 0.679
Pm017699 Prunus mume Pm017699 I 0.679
Cucsa.129330 Cucumis sativus Cucsa.129330 I 0.679
30174.m008756 Ricinus communis 30174.m008756 I 0.679
Ca_12080 Cicer arietinum Ca_12080 I 0.678
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I 0.678
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I 0.678
VIT_05s0049g00500 Vitis vinifera VIT_05s0049g00500 I 0.677
Gorai.001G252400 Gossypium raimondii Gorai.001G252400 I 0.677