Ciclev10018044m.g (Citrus clementina)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Ciclev10018044m.g T008006_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.698 0.941
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.698 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10018044m AP2 30 81

Links

Other AP2 family TFs
Other Citrus clementina TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.722
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.722
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.722
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.714
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.713
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.713
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.713
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.713
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.712
Cla012318 Citrullus lanatus Cla012318 I 0.712
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.711
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.699
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.699
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.699
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.699
OS07G0204000 Oryza sativa OS07G0204000 I 0.699
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.699
TCM_040015 Theobroma cacao TCM_040015 I 0.699
OBART07G06690 Oryza barthii OBART07G06690 I 0.699
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.699
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.699
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.699
OB07G15030 Oryza brachyantha OB07G15030 I 0.699
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.698
30084.m000185 Ricinus communis 30084.m000185 I 0.698
Pm025326 Prunus mume Pm025326 I 0.698
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.698
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.698
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.698
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.698
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.698
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.698
Ca_08232 Cicer arietinum Ca_08232 I 0.698
MDP0000177547 Malus domestica MDP0000177547 I 0.698
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.698
TCM_025913 Theobroma cacao TCM_025913 I 0.698
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.698
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.698
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.698
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.698
Bra020063 Brassica rapa Bra020063 I 0.698
Bra006518 Brassica rapa Bra006518 I 0.698
Bo2g018360 Brassica oleracea Bo2g018360 I 0.698
Bo3g013830 Brassica oleracea Bo3g013830 I 0.698
Bo9g152440 Brassica oleracea Bo9g152440 I 0.698
Bra002262 Brassica rapa Bra002262 I 0.698
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.698
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.698
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.698
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.698
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.698
Si033237m.g Setaria italica Si033237m.g I 0.696
mgf022665m Mimulus guttatus mgf022665m I 0.696
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.696
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.695
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.695
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.695
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.694
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.694
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.692
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.690
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.690
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.690
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.689
MDP0000172804 Malus domestica MDP0000172804 I 0.687
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.685