Sb02g006023 (Sorghum bicolor)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Sb02g006023 T004957_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.828 0.941
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.828 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb02g006023.1 AP2 50 101

Links

Other AP2 family TFs
Other Sorghum bicolor TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si033237m.g Setaria italica Si033237m.g I 0.832
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.831
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.829
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.829
OS07G0204000 Oryza sativa OS07G0204000 I 0.829
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.829
TCM_040015 Theobroma cacao TCM_040015 I 0.829
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.829
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.829
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.829
OBART07G06690 Oryza barthii OBART07G06690 I 0.829
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.829
OB07G15030 Oryza brachyantha OB07G15030 I 0.829
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.829
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.828
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.828
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.828
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.828
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.828
MDP0000177547 Malus domestica MDP0000177547 I 0.828
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.828
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.828
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.828
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.828
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.828
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.828
Pm025326 Prunus mume Pm025326 I 0.828
Ca_08232 Cicer arietinum Ca_08232 I 0.828
30084.m000185 Ricinus communis 30084.m000185 I 0.828
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.828
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.828
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.828
TCM_025913 Theobroma cacao TCM_025913 I 0.828
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.828
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.828
Bra002262 Brassica rapa Bra002262 I 0.828
Bo9g152440 Brassica oleracea Bo9g152440 I 0.828
Bra020063 Brassica rapa Bra020063 I 0.828
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.828
Bo2g018360 Brassica oleracea Bo2g018360 I 0.828
Bo3g013830 Brassica oleracea Bo3g013830 I 0.828
Bra006518 Brassica rapa Bra006518 I 0.828
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.826
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.825
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.825
mgf022665m Mimulus guttatus mgf022665m I 0.825
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.824
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.824
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.821
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.820
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.819
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.818
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.818
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.816
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.816
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.816
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.816
Cla012318 Citrullus lanatus Cla012318 I 0.815
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.815
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.814
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.808
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.808
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.803
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.802
Ca_10494 Cicer arietinum Ca_10494 I 0.799
TCM_018659 Theobroma cacao TCM_018659 I 0.799
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.799
OS12G0582900 Oryza sativa OS12G0582900 I 0.799
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.799
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.799
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.799
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.799
Pm015931 Prunus mume Pm015931 I 0.799
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.799
F775_02727 Aegilops tauschii F775_02727 I 0.799
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.799
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.799
Si038848m.g Setaria italica Si038848m.g I 0.799
29635.m000461 Ricinus communis 29635.m000461 I 0.799
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.799
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.799
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.799
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.799
MDP0000551969 Malus domestica MDP0000551969 I 0.799
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.799
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.799
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.799
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.799
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.799
MDP0000276536 Malus domestica MDP0000276536 I 0.799
OBART12G17080 Oryza barthii OBART12G17080 I 0.799
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.799
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.799
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.799
PK13330.1 Cannabis sativa PK13330.1 I 0.799
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.799
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.799
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.799
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.799
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.799
29813.m001543 Ricinus communis 29813.m001543 I 0.797
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.797
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.797
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.797
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.796
Si024417m.g Setaria italica Si024417m.g I 0.796
Cla010474 Citrullus lanatus Cla010474 I 0.796
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.796
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.796
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.796
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.796
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.796
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.796
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.796
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.796
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.796
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.796
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.795
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.795
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.794
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.794
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.791
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.791
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.790
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.786
mgf022810m Mimulus guttatus mgf022810m I 0.782
mgf023693m Mimulus guttatus mgf023693m I 0.782
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.782
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.781
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.781
MDP0000525933 Malus domestica MDP0000525933 I 0.778
Pm000004 Prunus mume Pm000004 I 0.778
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.778
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.777
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.777
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.777
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.772
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.771
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.765
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.763
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.763
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.761
MDP0000128326 Malus domestica MDP0000128326 I 0.761
TCM_011632 Theobroma cacao TCM_011632 I 0.761
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.761
F775_04303 Aegilops tauschii F775_04303 I 0.760
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.746
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.745
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.745
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.744
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.744
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.743
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.742
PK25269.1 Cannabis sativa PK25269.1 I 0.739
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.737
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.734
30174.m009031 Ricinus communis 30174.m009031 I 0.732
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.732
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.732
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.732
Cla021590 Citrullus lanatus Cla021590 I 0.729
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.729
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.727
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.727
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.727
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.726
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.726
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.726
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.726
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.725
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.725
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.724
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.724
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.723
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.723
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.723
TCM_005425 Theobroma cacao TCM_005425 I 0.723
MDP0000133476 Malus domestica MDP0000133476 I 0.723
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.723
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.723
MDP0000138669 Malus domestica MDP0000138669 I 0.723
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.723
Pm008788 Prunus mume Pm008788 I 0.723
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.723
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.723
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.723
mgf018851m Mimulus guttatus mgf018851m I 0.723
Si032213m.g Setaria italica Si032213m.g I 0.722
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.722
OB09G23520 Oryza brachyantha OB09G23520 I 0.722
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.722
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.720
OBART07G19610 Oryza barthii OBART07G19610 I 0.720
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.720
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.720
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.720
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.720
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.720
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.720
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.720
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.720
OS07G0575000 Oryza sativa OS07G0575000 I 0.720
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.719
30174.m008961 Ricinus communis 30174.m008961 I 0.719
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.718
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.717
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.716
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.716
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.716
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.716
Si030686m.g Setaria italica Si030686m.g I 0.716
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.715
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.714
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.713
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.713
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.713
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.711
Ca_25424 Cicer arietinum Ca_25424 I 0.709
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.707
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.705
MDP0000197375 Malus domestica MDP0000197375 I 0.705
Pm030235 Prunus mume Pm030235 I 0.705
MDP0000157628 Malus domestica MDP0000157628 I 0.705
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.704
TCM_014471 Theobroma cacao TCM_014471 I 0.703
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.702
Ca_16397 Cicer arietinum Ca_16397 I 0.702
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.702
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.702
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.701
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.701
Ca_00417 Cicer arietinum Ca_00417 I 0.700
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.696
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.694
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.694
TCM_015579 Theobroma cacao TCM_015579 I 0.690
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.690
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.690
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.690
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.689
PK28640.1 Cannabis sativa PK28640.1 I 0.687
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.684
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.683
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.683
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.682
MDP0000172804 Malus domestica MDP0000172804 I 0.682
Si027288m.g Setaria italica Si027288m.g I 0.681
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.678
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.678
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.678
30068.m002623 Ricinus communis 30068.m002623 I 0.678
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.677
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.677