POPTR_0014s07280 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0014s07280 T004726_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.724 0.745
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.724 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s07280.1 AP2 27 78

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf018851m Mimulus guttatus mgf018851m I 0.822
TCM_005425 Theobroma cacao TCM_005425 I 0.822
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.822
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.822
Pm008788 Prunus mume Pm008788 I 0.822
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.822
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.822
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.822
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.822
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.822
MDP0000133476 Malus domestica MDP0000133476 I 0.822
MDP0000138669 Malus domestica MDP0000138669 I 0.822
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.822
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.819
30174.m008961 Ricinus communis 30174.m008961 I 0.818
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.815
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.812
Si032213m.g Setaria italica Si032213m.g I 0.812
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.806
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.806
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.806
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.806
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.804
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.802
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.802
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.802
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.800
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.800
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.795
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.795
Cla021590 Citrullus lanatus Cla021590 I 0.795
Ca_16397 Cicer arietinum Ca_16397 I 0.790
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.790
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.790
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.790
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.790
PK25269.1 Cannabis sativa PK25269.1 I 0.778
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.775
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.775
OB09G23520 Oryza brachyantha OB09G23520 I 0.768
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.761
Si027288m.g Setaria italica Si027288m.g I 0.755
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.752
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.750
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.749
TCM_015579 Theobroma cacao TCM_015579 I 0.749
TCM_011632 Theobroma cacao TCM_011632 I 0.749
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.749
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.749
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.749
30068.m002623 Ricinus communis 30068.m002623 I 0.747
29813.m001543 Ricinus communis 29813.m001543 I 0.746
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.746
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.746
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.746
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.745
Cla010474 Citrullus lanatus Cla010474 I 0.745
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.745
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.745
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.745
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.745
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.745
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.745
Si024417m.g Setaria italica Si024417m.g I 0.745
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.745
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.745
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.745
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.745
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.744
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.744
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.744
PK13330.1 Cannabis sativa PK13330.1 I 0.744
Si038848m.g Setaria italica Si038848m.g I 0.744
Ca_25424 Cicer arietinum Ca_25424 I 0.744
MDP0000276536 Malus domestica MDP0000276536 I 0.744
29635.m000461 Ricinus communis 29635.m000461 I 0.744
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.744
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.744
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.744
Pm015931 Prunus mume Pm015931 I 0.744
MDP0000551969 Malus domestica MDP0000551969 I 0.744
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.744
Ca_10494 Cicer arietinum Ca_10494 I 0.744
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.744
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.744
TCM_018659 Theobroma cacao TCM_018659 I 0.744
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.744
OBART12G17080 Oryza barthii OBART12G17080 I 0.744
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.744
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.744
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.744
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.744
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.744
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.744
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.744
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.744
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.744
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.744
OS12G0582900 Oryza sativa OS12G0582900 I 0.744
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.744
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.744
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.744
F775_02727 Aegilops tauschii F775_02727 I 0.744
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.744
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.744
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.744
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.744
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.742
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.742
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.741
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.740
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.740
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.740
30174.m009031 Ricinus communis 30174.m009031 I 0.739
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.738
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.737
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.737
Ca_00417 Cicer arietinum Ca_00417 I 0.736
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.734
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.734
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.734
POPTR_0002s15480 Populus trichocarpa POPTR_0002s15480 N 0.733
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.733
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.731
MDP0000197375 Malus domestica MDP0000197375 I 0.730
Pm030235 Prunus mume Pm030235 I 0.730
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.730
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.730
MDP0000157628 Malus domestica MDP0000157628 I 0.730
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.728
TCM_014471 Theobroma cacao TCM_014471 I 0.728
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.727
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.726
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.725
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.724
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.724
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.724
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.724
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.724
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.724
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.724
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.724
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.724
Bo9g152440 Brassica oleracea Bo9g152440 I 0.724
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.724
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.724
MDP0000177547 Malus domestica MDP0000177547 I 0.724
Bra006518 Brassica rapa Bra006518 I 0.724
Bra020063 Brassica rapa Bra020063 I 0.724
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.724
Bra002262 Brassica rapa Bra002262 I 0.724
Bo3g013830 Brassica oleracea Bo3g013830 I 0.724
Bo2g018360 Brassica oleracea Bo2g018360 I 0.724
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.724
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.724
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.724
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.724
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.724
30084.m000185 Ricinus communis 30084.m000185 I 0.724
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.724
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.724
TCM_040015 Theobroma cacao TCM_040015 I 0.724
OBART07G06690 Oryza barthii OBART07G06690 I 0.724
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.724
Pm025326 Prunus mume Pm025326 I 0.724
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.724
Ca_08232 Cicer arietinum Ca_08232 I 0.724
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.724
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.724
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.724
OB07G15030 Oryza brachyantha OB07G15030 I 0.724
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.724
TCM_025913 Theobroma cacao TCM_025913 I 0.724
OS07G0204000 Oryza sativa OS07G0204000 I 0.724
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.724
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.723
MDP0000127123 Malus domestica MDP0000127123 N 0.723
Si033237m.g Setaria italica Si033237m.g I 0.723
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.722
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.722
Cla005054 Citrullus lanatus Cla005054 N 0.722
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.722
mgf022665m Mimulus guttatus mgf022665m I 0.721
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.720
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.720
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.719
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.719
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.719
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.719
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.718
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.717
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.716
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.716
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.716
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.716
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.714
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.713
MDP0000525933 Malus domestica MDP0000525933 I 0.713
Pm000004 Prunus mume Pm000004 I 0.713
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.712
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.711
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.711
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.711
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.711
Cla012318 Citrullus lanatus Cla012318 I 0.711
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.710
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.710
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.710
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.710
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.710
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.710
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.708
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.708
PK28640.1 Cannabis sativa PK28640.1 I 0.707
MDP0000316843 Malus domestica MDP0000316843 N 0.707
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.705
F775_04303 Aegilops tauschii F775_04303 I 0.705
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.705
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.704
mgf022810m Mimulus guttatus mgf022810m I 0.700
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.700
mgf023693m Mimulus guttatus mgf023693m I 0.700
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.699
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.699
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.698
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.697
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.697
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.697
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.697
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.694
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.694
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.694
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.693
mgf024137m Mimulus guttatus mgf024137m N 0.691
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.690
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.687
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.687
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.684
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.684
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.683
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.683
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.683
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.682
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.681
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.680
Si030686m.g Setaria italica Si030686m.g I 0.680
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.680
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.680
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.679
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.679
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.678
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.677