Gorai.007G260900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.007G260900 T008595_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.745 0.902
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.745 0.902
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.007G260900.1 AP2 31 82

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.783
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.783
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.781
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.780
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.772
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.769
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.763
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.761
Cla012318 Citrullus lanatus Cla012318 I 0.760
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.760
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.758
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.758
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.758
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.758
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.758
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.757
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.754
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.747
Ca_08232 Cicer arietinum Ca_08232 I 0.747
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.747
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.747
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.747
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.747
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.747
TCM_025913 Theobroma cacao TCM_025913 I 0.747
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.747
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.747
Pm025326 Prunus mume Pm025326 I 0.747
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.747
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.747
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.747
MDP0000177547 Malus domestica MDP0000177547 I 0.747
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.745
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.745
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.745
30084.m000185 Ricinus communis 30084.m000185 I 0.745
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.745
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.745
OS07G0204000 Oryza sativa OS07G0204000 I 0.745
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.745
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.745
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.745
OBART07G06690 Oryza barthii OBART07G06690 I 0.745
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.745
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.745
TCM_040015 Theobroma cacao TCM_040015 I 0.745
Bo3g013830 Brassica oleracea Bo3g013830 I 0.745
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.745
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.745
Bo9g152440 Brassica oleracea Bo9g152440 I 0.745
Bra006518 Brassica rapa Bra006518 I 0.745
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.745
Bra020063 Brassica rapa Bra020063 I 0.745
Bo2g018360 Brassica oleracea Bo2g018360 I 0.745
Bra002262 Brassica rapa Bra002262 I 0.745
OB07G15030 Oryza brachyantha OB07G15030 I 0.745
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.745
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.744
mgf022665m Mimulus guttatus mgf022665m I 0.744
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.743
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.742
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.742
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.742
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.742
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.742
Si033237m.g Setaria italica Si033237m.g I 0.742
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.740
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.740
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.740
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.739
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.738
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.736
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.736
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.736
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.736
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.736
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.736
Cla010474 Citrullus lanatus Cla010474 I 0.736
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.736
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.736
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.736
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.736
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.736
Si024417m.g Setaria italica Si024417m.g I 0.736
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.736
F775_02727 Aegilops tauschii F775_02727 I 0.733
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.733
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.733
OBART12G17080 Oryza barthii OBART12G17080 I 0.733
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.733
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.733
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.733
29635.m000461 Ricinus communis 29635.m000461 I 0.733
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.733
MDP0000551969 Malus domestica MDP0000551969 I 0.733
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.733
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.733
Pm015931 Prunus mume Pm015931 I 0.733
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.733
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.733
TCM_018659 Theobroma cacao TCM_018659 I 0.733
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.733
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.733
Ca_10494 Cicer arietinum Ca_10494 I 0.733
OS12G0582900 Oryza sativa OS12G0582900 I 0.733
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.733
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.733
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.733
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.733
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.733
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.733
MDP0000276536 Malus domestica MDP0000276536 I 0.733
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.733
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.733
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.733
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.733
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.733
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.733
Si038848m.g Setaria italica Si038848m.g I 0.733
PK13330.1 Cannabis sativa PK13330.1 I 0.733
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.733
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.733
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.731
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.731
29813.m001543 Ricinus communis 29813.m001543 I 0.731
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.731
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.731
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.731
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.729
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.727
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.727
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.725
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.725
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.723
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.722
mgf022810m Mimulus guttatus mgf022810m I 0.721
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.721
MDP0000525933 Malus domestica MDP0000525933 I 0.721
mgf023693m Mimulus guttatus mgf023693m I 0.721
Pm000004 Prunus mume Pm000004 I 0.721
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.721
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.720
MDP0000127123 Malus domestica MDP0000127123 N 0.717
mgf024137m Mimulus guttatus mgf024137m N 0.716
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.716
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.715
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.713
Ca_00417 Cicer arietinum Ca_00417 I 0.713
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.711
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.711
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.711
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.711
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.710
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.710
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.710
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.710
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.710
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.710
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.709
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.709
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.708
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.707
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.707
MDP0000316843 Malus domestica MDP0000316843 N 0.703
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.703
PK28640.1 Cannabis sativa PK28640.1 I 0.702
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.701
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.700
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.700
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.698
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.698
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.695
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.695
TCM_011632 Theobroma cacao TCM_011632 I 0.695
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.695
F775_04303 Aegilops tauschii F775_04303 I 0.694
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.686
Ca_25424 Cicer arietinum Ca_25424 I 0.686
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.685
Cla021590 Citrullus lanatus Cla021590 I 0.685
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.684
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.683
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.683
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.683
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.682
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.682
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.682
Ca_16397 Cicer arietinum Ca_16397 I 0.682
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.682
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.682
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.681
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.681
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.680
MDP0000128326 Malus domestica MDP0000128326 I 0.680
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.680
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.679
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.679
Pm008788 Prunus mume Pm008788 I 0.679
mgf018851m Mimulus guttatus mgf018851m I 0.679
TCM_005425 Theobroma cacao TCM_005425 I 0.679
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.679
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.679
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.679
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.679
MDP0000133476 Malus domestica MDP0000133476 I 0.679
MDP0000138669 Malus domestica MDP0000138669 I 0.679
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.679
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.679
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.679
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.679
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.678
Si032213m.g Setaria italica Si032213m.g I 0.678
PGSC0003DMG400008352 Solanum tuberosum PGSC0003DMG400008352 N 0.677
OB09G23520 Oryza brachyantha OB09G23520 I 0.677