CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ORGLA12G0200400
(
Oryza glaberrima
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
ORGLA12G0200400
T003965_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.796
0.863
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.796
0.863
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ORGLA12G0200400.1
AP2
70
121
KRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGA
Links
Other
AP2
family TFs
Other
Oryza glaberrima
TFs
269 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb08g019530
Sorghum bicolor
Sb08g019530
I
0.823
GRMZM2G039112
Zea mays
GRMZM2G039112
I
0.823
Ciclev10013796m.g
Citrus clementina
Ciclev10013796m.g
I
0.823
GSMUA_Achr4G28070_001
Musa acuminata
GSMUA_Achr4G28070_001
I
0.823
TCM_018659
Theobroma cacao
TCM_018659
I
0.823
evm.TU.supercontig_14.126
Carica papaya
evm.TU.supercontig_14.126
I
0.823
gene04400-v1.0-hybrid
Fragaria vesca
gene04400-v1.0-hybrid
I
0.823
GLYMA19G03120
Glycine max
GLYMA19G03120
I
0.823
OPUNC12G15550
Oryza punctata
OPUNC12G15550
I
0.823
ORUFI12G19000
Oryza rufipogon
ORUFI12G19000
I
0.823
POPTR_0017s12370
Populus trichocarpa
POPTR_0017s12370
I
0.823
Traes_5DS_1BDB9837E
Triticum aestivum
Traes_5DS_1BDB9837E
I
0.823
Ca_10494
Cicer arietinum
Ca_10494
I
0.823
OBART12G17080
Oryza barthii
OBART12G17080
I
0.823
OGLUM12G18720
Oryza glumaepatula
OGLUM12G18720
I
0.823
VIT_14s0108g01220
Vitis vinifera
VIT_14s0108g01220
I
0.823
Pm015931
Prunus mume
Pm015931
I
0.823
29635.m000461
Ricinus communis
29635.m000461
I
0.823
MLOC_7255
Hordeum vulgare
MLOC_7255
I
0.823
MTR_6g012970
Medicago truncatula
MTR_6g012970
I
0.823
PRUPE_ppa025010mg
Prunus persica
PRUPE_ppa025010mg
I
0.823
Gorai.006G013600
Gossypium raimondii
Gorai.006G013600
I
0.823
GLYMA19G03165
Glycine max
GLYMA19G03165
I
0.823
BGIOSGA037681
Oryza indica
BGIOSGA037681
I
0.823
F775_02727
Aegilops tauschii
F775_02727
I
0.823
MDP0000276536
Malus domestica
MDP0000276536
I
0.823
MDP0000551969
Malus domestica
MDP0000551969
I
0.823
Si038848m.g
Setaria italica
Si038848m.g
I
0.823
orange1.1g046337m.g
Citrus sinensis
orange1.1g046337m.g
I
0.823
OS12G0582900
Oryza sativa
OS12G0582900
I
0.823
SapurV1A.0322s0110
Salix purpurea
SapurV1A.0322s0110
I
0.823
PGSC0003DMG400001343
Solanum tuberosum
PGSC0003DMG400001343
I
0.823
OMERI11G15200
Oryza meridionalis
OMERI11G15200
I
0.823
PK13330.1
Cannabis sativa
PK13330.1
I
0.823
ONIVA12G15550
Oryza nivara
ONIVA12G15550
I
0.823
Ciclev10033847m.g
Citrus clementina
Ciclev10033847m.g
I
0.822
29813.m001543
Ricinus communis
29813.m001543
I
0.822
orange1.1g046190m.g
Citrus sinensis
orange1.1g046190m.g
I
0.822
cassava4189.m1
Manihot esculenta
cassava4189.m1
I
0.822
cassava1773.valid.m1
Manihot esculenta
cassava1773.valid.m1
I
0.820
Pavir.J28133
Panicum virgatum
Pavir.J28133
I
0.820
Si024417m.g
Setaria italica
Si024417m.g
I
0.820
Cla010474
Citrullus lanatus
Cla010474
I
0.820
Sb01g014810
Sorghum bicolor
Sb01g014810
I
0.820
Pavir.J28151
Panicum virgatum
Pavir.J28151
I
0.820
Pavir.Ib03934
Panicum virgatum
Pavir.Ib03934
I
0.820
Pavir.Ia01300
Panicum virgatum
Pavir.Ia01300
I
0.820
GRMZM2G010100
Zea mays
GRMZM2G010100
I
0.820
Lus10001298.g
Linum usitatissimum
Lus10001298.g
I
0.820
Lus10012703.g
Linum usitatissimum
Lus10012703.g
I
0.820
Pavir.Cb00448
Panicum virgatum
Pavir.Cb00448
I
0.820
Cucsa.158080
Cucumis sativus
Cucsa.158080
I
0.820
GLYMA13G05690
Glycine max
GLYMA13G05690
I
0.819
cassava4942.m1
Manihot esculenta
cassava4942.m1
I
0.819
Lus10036793.g
Linum usitatissimum
Lus10036793.g
I
0.818
Lus10037137.g
Linum usitatissimum
Lus10037137.g
I
0.818
Aquca_002_00706
Aquilegia coerulea
Aquca_002_00706
I
0.815
MTR_7g011630
Medicago truncatula
MTR_7g011630
I
0.815
POPTR_0008s09080
Populus trichocarpa
POPTR_0008s09080
I
0.814
PGSC0003DMG400025151
Solanum tuberosum
PGSC0003DMG400025151
I
0.814
GLYMA18G49761
Glycine max
GLYMA18G49761
I
0.814
Solyc02g067020.1
Solanum lycopersicum
Solyc02g067020.1
I
0.809
cassava9290.m1
Manihot esculenta
cassava9290.m1
I
0.809
Eucgr.B03605
Eucalyptus grandis
Eucgr.B03605
I
0.808
Eucgr.I02007
Eucalyptus grandis
Eucgr.I02007
I
0.806
SapurV1A.1886s0020
Salix purpurea
SapurV1A.1886s0020
I
0.805
Lus10030430.g
Linum usitatissimum
Lus10030430.g
I
0.800
Sb02g006023
Sorghum bicolor
Sb02g006023
I
0.799
Si033237m.g
Setaria italica
Si033237m.g
I
0.799
Pavir.Ba03636
Panicum virgatum
Pavir.Ba03636
I
0.798
POPTR_0001s04190
Populus trichocarpa
POPTR_0001s04190
I
0.796
PRUPE_ppa016109mg
Prunus persica
PRUPE_ppa016109mg
I
0.796
POPTR_0003s21090
Populus trichocarpa
POPTR_0003s21090
I
0.796
RAP2.11
Arabidopsis lyrata
scaffold_602074.1
I
0.796
Bostr.26527s0221
Boechera stricta
Bostr.26527s0221
I
0.796
MDP0000177547
Malus domestica
MDP0000177547
I
0.796
Gorai.013G244500
Gossypium raimondii
Gorai.013G244500
I
0.796
SapurV1A.0918s0170
Salix purpurea
SapurV1A.0918s0170
I
0.796
Thhalv10015715m.g
Eutrema salsugineum
Thhalv10015715m.g
I
0.796
chr1.CM0371.120.nc
Lotus japonicus
chr1.CM0371.120.nc
I
0.796
evm.TU.supercontig_51.136
Carica papaya
evm.TU.supercontig_51.136
I
0.796
Carubv10002733m.g
Capsella rubella
Carubv10002733m.g
I
0.796
Ca_08232
Cicer arietinum
Ca_08232
I
0.796
RAP2.11
Vitis vinifera
VIT_08s0007g07250
I
0.796
Pm025326
Prunus mume
Pm025326
I
0.796
30084.m000185
Ricinus communis
30084.m000185
I
0.796
Cagra.1268s0022
Capsella grandiflora
Cagra.1268s0022
I
0.796
TCM_025913
Theobroma cacao
TCM_025913
I
0.796
TCM_040015
Theobroma cacao
TCM_040015
I
0.796
ORUFI07G06610
Oryza rufipogon
ORUFI07G06610
I
0.796
OLONG_022569
Oryza longistaminata
OLONG_022569
I
0.796
GLYMA16G04410
Glycine max
GLYMA16G04410
I
0.796
GLYMA19G29000
Glycine max
GLYMA19G29000
I
0.796
Bo9g152440
Brassica oleracea
Bo9g152440
I
0.796
Bo3g013830
Brassica oleracea
Bo3g013830
I
0.796
BGIOSGA025360
Oryza indica
BGIOSGA025360
I
0.796
ONIVA01G29960
Oryza nivara
ONIVA01G29960
I
0.796
Bo2g018360
Brassica oleracea
Bo2g018360
I
0.796
ORGLA07G0057000
Oryza glaberrima
ORGLA07G0057000
I
0.796
RAP2-11
Arabidopsis thaliana
AT5G19790
D
0.796
Bra002262
Brassica rapa
Bra002262
I
0.796
GSMUA_Achr4G28640_001
Musa acuminata
GSMUA_Achr4G28640_001
I
0.796
LPERR07G05890
Leersia perrieri
LPERR07G05890
I
0.796
MTR_7g085810
Medicago truncatula
MTR_7g085810
I
0.796
Bra020063
Brassica rapa
Bra020063
I
0.796
OGLUM07G06400
Oryza glumaepatula
OGLUM07G06400
I
0.796
OS07G0204000
Oryza sativa
OS07G0204000
I
0.796
OB07G15030
Oryza brachyantha
OB07G15030
I
0.796
OBART07G06690
Oryza barthii
OBART07G06690
I
0.796
Bra006518
Brassica rapa
Bra006518
I
0.796
Pavir.Bb00676
Panicum virgatum
Pavir.Bb00676
I
0.793
mgf022665m
Mimulus guttatus
mgf022665m
I
0.793
gene16598-v1.0-hybrid
Fragaria vesca
gene16598-v1.0-hybrid
I
0.793
AMTR_s00068p00102110
Amborella trichopoda
AMTR_s00068p00102110
I
0.793
Aquca_004_00669
Aquilegia coerulea
Aquca_004_00669
I
0.792
OPUNC07G06390
Oryza punctata
OPUNC07G06390
I
0.791
cassava23953.valid.m1
Manihot esculenta
cassava23953.valid.m1
I
0.789
Eucgr.A02109
Eucalyptus grandis
Eucgr.A02109
I
0.788
LPERR12G14340
Leersia perrieri
LPERR12G14340
I
0.787
TCM_011632
Theobroma cacao
TCM_011632
I
0.786
Gorai.008G178900
Gossypium raimondii
Gorai.008G178900
I
0.786
AMTR_s00058p00066390
Amborella trichopoda
AMTR_s00058p00066390
I
0.785
F775_04303
Aegilops tauschii
F775_04303
I
0.785
orange1.1g043751m.g
Citrus sinensis
orange1.1g043751m.g
I
0.783
Cucsa.334870
Cucumis sativus
Cucsa.334870
I
0.783
Cla012318
Citrullus lanatus
Cla012318
I
0.783
Lus10010652.g
Linum usitatissimum
Lus10010652.g
I
0.783
Ciclev10021611m.g
Citrus clementina
Ciclev10021611m.g
I
0.783
orange1.1g023169m.g
Citrus sinensis
orange1.1g023169m.g
I
0.783
gene24824-v1.0-hybrid
Fragaria vesca
gene24824-v1.0-hybrid
I
0.781
mgf022810m
Mimulus guttatus
mgf022810m
I
0.772
mgf023693m
Mimulus guttatus
mgf023693m
I
0.772
SapurV1A.0081s0430
Salix purpurea
SapurV1A.0081s0430
I
0.770
POPTR_0010s17110
Populus trichocarpa
POPTR_0010s17110
I
0.768
Solyc01g005630.1
Solanum lycopersicum
Solyc01g005630.1
I
0.765
VIT_06s0004g00490
Vitis vinifera
VIT_06s0004g00490
I
0.762
PK25269.1
Cannabis sativa
PK25269.1
I
0.761
SELMODRAFT_73140
Selaginella moellendorffii
SELMODRAFT_73140
I
0.760
SELMODRAFT_73145
Selaginella moellendorffii
SELMODRAFT_73145
I
0.760
ORUFI09G18220
Oryza rufipogon
ORUFI09G18220
I
0.750
Cucsa.258020
Cucumis sativus
Cucsa.258020
I
0.750
Cla021590
Citrullus lanatus
Cla021590
I
0.750
OPUNC09G15300
Oryza punctata
OPUNC09G15300
I
0.750
OMERI09G12500
Oryza meridionalis
OMERI09G12500
I
0.750
Gorai.013G115000
Gossypium raimondii
Gorai.013G115000
I
0.749
BGIOSGA031114
Oryza indica
BGIOSGA031114
I
0.748
ONIVA09G17920
Oryza nivara
ONIVA09G17920
I
0.748
cassava9303.m1
Manihot esculenta
cassava9303.m1
I
0.747
OB09G23520
Oryza brachyantha
OB09G23520
I
0.746
MDP0000128326
Malus domestica
MDP0000128326
I
0.746
PRUPE_ppa025828mg
Prunus persica
PRUPE_ppa025828mg
I
0.745
BRADI1G54450
Brachypodium distachyon
BRADI1G54450
I
0.745
MLOC_18783
Hordeum vulgare
MLOC_18783
I
0.745
MDP0000525933
Malus domestica
MDP0000525933
I
0.745
Pavir.Ba01277
Panicum virgatum
Pavir.Ba01277
I
0.745
AMTR_s00069p00132820
Amborella trichopoda
AMTR_s00069p00132820
I
0.745
Si032213m.g
Setaria italica
Si032213m.g
I
0.745
Pm000004
Prunus mume
Pm000004
I
0.745
mgf018851m
Mimulus guttatus
mgf018851m
I
0.744
MDP0000133476
Malus domestica
MDP0000133476
I
0.744
Gorai.008G116800
Gossypium raimondii
Gorai.008G116800
I
0.744
orange1.1g037119m.g
Citrus sinensis
orange1.1g037119m.g
I
0.744
cassava40212.m1
Manihot esculenta
cassava40212.m1
I
0.744
Lus10036556.g
Linum usitatissimum
Lus10036556.g
I
0.744
TCM_005425
Theobroma cacao
TCM_005425
I
0.744
POPTR_0014s07280
Populus trichocarpa
POPTR_0014s07280
I
0.744
Ciclev10023764m.g
Citrus clementina
Ciclev10023764m.g
I
0.744
Pm008788
Prunus mume
Pm008788
I
0.744
PRUPE_ppa022202mg
Prunus persica
PRUPE_ppa022202mg
I
0.744
SapurV1A.2432s0010
Salix purpurea
SapurV1A.2432s0010
I
0.744
gene16905-v1.0-hybrid
Fragaria vesca
gene16905-v1.0-hybrid
I
0.744
MDP0000138669
Malus domestica
MDP0000138669
I
0.744
Lus10041372.g
Linum usitatissimum
Lus10041372.g
I
0.743
30174.m008961
Ricinus communis
30174.m008961
I
0.740
Sb02g030350
Sorghum bicolor
Sb02g030350
I
0.739
GRMZM2G018138
Zea mays
GRMZM2G018138
I
0.739
Lus10013614.g
Linum usitatissimum
Lus10013614.g
I
0.738
OGLUM09G17450
Oryza glumaepatula
OGLUM09G17450
I
0.737
LPERR09G12960
Leersia perrieri
LPERR09G12960
I
0.737
Lus10039171.g
Linum usitatissimum
Lus10039171.g
I
0.736
30174.m009031
Ricinus communis
30174.m009031
I
0.735
cassava4119.m1
Manihot esculenta
cassava4119.m1
I
0.735
Lus10013764.g
Linum usitatissimum
Lus10013764.g
I
0.734
Ca_25424
Cicer arietinum
Ca_25424
I
0.734
Gorai.007G260900
Gossypium raimondii
Gorai.007G260900
I
0.733
Cucsa.152770
Cucumis sativus
Cucsa.152770
I
0.732
GRMZM2G019443
Zea mays
GRMZM2G019443
I
0.730
GSMUA_Achr3G12350_001
Musa acuminata
GSMUA_Achr3G12350_001
I
0.728
PGSC0003DMG400017051
Solanum tuberosum
PGSC0003DMG400017051
I
0.728
Solyc01g091760.2
Solanum lycopersicum
Solyc01g091760.2
I
0.728
MTR_4g082345
Medicago truncatula
MTR_4g082345
I
0.728
MDP0000197375
Malus domestica
MDP0000197375
I
0.727
MDP0000157628
Malus domestica
MDP0000157628
I
0.727
PRUPE_ppa018710mg
Prunus persica
PRUPE_ppa018710mg
I
0.727
evm.TU.supercontig_18.194
Carica papaya
evm.TU.supercontig_18.194
I
0.727
Pm030235
Prunus mume
Pm030235
I
0.727
cassava28630.m1
Manihot esculenta
cassava28630.m1
I
0.727
TCM_014471
Theobroma cacao
TCM_014471
I
0.724
Ca_16397
Cicer arietinum
Ca_16397
I
0.723
MTR_8g032610
Medicago truncatula
MTR_8g032610
I
0.723
Ca_00417
Cicer arietinum
Ca_00417
I
0.723
GLYMA07G08542
Glycine max
GLYMA07G08542
I
0.723
GLYMA03G01931
Glycine max
GLYMA03G01931
I
0.723
AMTR_s00006p00266920
Amborella trichopoda
AMTR_s00006p00266920
I
0.721
Solyc10g080650.1
Solanum lycopersicum
Solyc10g080650.1
I
0.720
PGSC0003DMG400023701
Solanum tuberosum
PGSC0003DMG400023701
I
0.720
Aquca_026_00181
Aquilegia coerulea
Aquca_026_00181
I
0.718
MTR_6g029180
Medicago truncatula
MTR_6g029180
I
0.715
Gorai.008G261800
Gossypium raimondii
Gorai.008G261800
I
0.714
Ciclev10023360m.g
Citrus clementina
Ciclev10023360m.g
I
0.714
TCM_015579
Theobroma cacao
TCM_015579
I
0.714
cassava9887.m1
Manihot esculenta
cassava9887.m1
I
0.714
orange1.1g016393m.g
Citrus sinensis
orange1.1g016393m.g
I
0.714
PK28640.1
Cannabis sativa
PK28640.1
I
0.710
VIT_17s0000g04480
Vitis vinifera
VIT_17s0000g04480
I
0.708
evm.TU.supercontig_62.63
Carica papaya
evm.TU.supercontig_62.63
I
0.706
Si027288m.g
Setaria italica
Si027288m.g
I
0.705
LPERR07G17030
Leersia perrieri
LPERR07G17030
I
0.704
30068.m002623
Ricinus communis
30068.m002623
I
0.703
POPTR_0013s05330
Populus trichocarpa
POPTR_0013s05330
I
0.700
Aquca_013_00424
Aquilegia coerulea
Aquca_013_00424
I
0.699
GLYMA16G27040
Glycine max
GLYMA16G27040
I
0.699
GLYMA02G08020
Glycine max
GLYMA02G08020
I
0.699
PGSC0003DMG400024606
Solanum tuberosum
PGSC0003DMG400024606
I
0.697
Solyc03g114440.1
Solanum lycopersicum
Solyc03g114440.1
N
0.695
Eucgr.B00666
Eucalyptus grandis
Eucgr.B00666
I
0.695
orange1.1g042608m.g
Citrus sinensis
orange1.1g042608m.g
N
0.694
POPTR_0019s05170
Populus trichocarpa
POPTR_0019s05170
I
0.694
Ciclev10022187m.g
Citrus clementina
Ciclev10022187m.g
N
0.694
SapurV1A.0598s0020
Salix purpurea
SapurV1A.0598s0020
I
0.694
BRADI1G23756
Brachypodium distachyon
BRADI1G23756
I
0.693
MTR_2g016730
Medicago truncatula
MTR_2g016730
N
0.693
Ciclev10024614m.g
Citrus clementina
Ciclev10024614m.g
N
0.691
e_gw1.233.44.1
Physcomitrella patens
e_gw1.233.44.1
I
0.689
e_gw1.64.98.1
Physcomitrella patens
e_gw1.64.98.1
I
0.689
AMTR_s00003p00165930
Amborella trichopoda
AMTR_s00003p00165930
I
0.688
OMERI07G16350
Oryza meridionalis
OMERI07G16350
I
0.687
OGLUM07G19400
Oryza glumaepatula
OGLUM07G19400
I
0.687
ONIVA07G17970
Oryza nivara
ONIVA07G17970
I
0.687
BGIOSGA024035
Oryza indica
BGIOSGA024035
I
0.687
OS07G0575000
Oryza sativa
OS07G0575000
I
0.687
ORUFI07G20430
Oryza rufipogon
ORUFI07G20430
I
0.687
ORGLA07G0253000
Oryza glaberrima
ORGLA07G0253000
I
0.687
OPUNC07G18550
Oryza punctata
OPUNC07G18550
I
0.687
OBART07G19610
Oryza barthii
OBART07G19610
I
0.687
Traes_2BS_B1A73C7A8
Triticum aestivum
Traes_2BS_B1A73C7A8
I
0.687
MLOC_69002
Hordeum vulgare
MLOC_69002
I
0.687
GRMZM2G011236
Zea mays
GRMZM2G011236
I
0.686
GRMZM2G384386
Zea mays
GRMZM2G384386
I
0.685
Cla005054
Citrullus lanatus
Cla005054
N
0.684
Cucsa.193280
Cucumis sativus
Cucsa.193280
N
0.684
SELMODRAFT_409196
Selaginella moellendorffii
SELMODRAFT_409196
N
0.683
Pavir.J19478
Panicum virgatum
Pavir.J19478
I
0.683
SELMODRAFT_411255
Selaginella moellendorffii
SELMODRAFT_411255
N
0.683
Si030686m.g
Setaria italica
Si030686m.g
I
0.683
Pavir.Ba00533
Panicum virgatum
Pavir.Ba00533
I
0.683
MDP0000127123
Malus domestica
MDP0000127123
N
0.683
gene01844-v1.0-hybrid
Fragaria vesca
gene01844-v1.0-hybrid
N
0.682
e_gw1.195.59.1
Physcomitrella patens
e_gw1.195.59.1
N
0.682
GLYMA05G07690
Glycine max
GLYMA05G07690
I
0.681
POPTR_0001s45740
Populus trichocarpa
POPTR_0001s45740
N
0.681
PRUPE_ppa019500mg
Prunus persica
PRUPE_ppa019500mg
N
0.681
PGSC0003DMG400005621
Solanum tuberosum
PGSC0003DMG400005621
N
0.681
GLYMA17G13320
Glycine max
GLYMA17G13320
I
0.681
Gorai.004G127900
Gossypium raimondii
Gorai.004G127900
N
0.681
Solyc03g119800.1
Solanum lycopersicum
Solyc03g119800.1
N
0.681
VIT_02s0025g03170
Vitis vinifera
VIT_02s0025g03170
N
0.679
LjT06B04.30.nd
Lotus japonicus
LjT06B04.30.nd
N
0.677
GLYMA15G09190
Glycine max
GLYMA15G09190
N
0.677