CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0010s17110
(
Populus trichocarpa
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
POPTR_0010s17110
T004695_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAP2-11
M06665_2.00
Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN
Dap-seq
OMalley et al.(2016)
RAP211_col_a
0.741
0.765
RAP2-11
M06666_2.00
Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND
Dap-seq
OMalley et al.(2016)
RAP211_colamp_a
0.741
0.765
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0010s17110.1
AP2
13
64
KRYPGVRQRPSGRWVAEIKDTIQEIRVWLGTYDTAGEAARAYDEAACLLRGA
Links
Other
AP2
family TFs
Other
Populus trichocarpa
TFs
205 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29813.m001543
Ricinus communis
29813.m001543
I
0.771
cassava4189.m1
Manihot esculenta
cassava4189.m1
I
0.771
Ciclev10033847m.g
Citrus clementina
Ciclev10033847m.g
I
0.771
orange1.1g046190m.g
Citrus sinensis
orange1.1g046190m.g
I
0.771
Sb08g019530
Sorghum bicolor
Sb08g019530
I
0.768
OS12G0582900
Oryza sativa
OS12G0582900
I
0.768
PRUPE_ppa025010mg
Prunus persica
PRUPE_ppa025010mg
I
0.768
PGSC0003DMG400001343
Solanum tuberosum
PGSC0003DMG400001343
I
0.768
POPTR_0008s09080
Populus trichocarpa
POPTR_0008s09080
I
0.768
POPTR_0017s12370
Populus trichocarpa
POPTR_0017s12370
I
0.768
ORUFI12G19000
Oryza rufipogon
ORUFI12G19000
I
0.768
OGLUM12G18720
Oryza glumaepatula
OGLUM12G18720
I
0.768
OBART12G17080
Oryza barthii
OBART12G17080
I
0.768
MTR_6g012970
Medicago truncatula
MTR_6g012970
I
0.768
OMERI11G15200
Oryza meridionalis
OMERI11G15200
I
0.768
ONIVA12G15550
Oryza nivara
ONIVA12G15550
I
0.768
ORGLA12G0200400
Oryza glaberrima
ORGLA12G0200400
I
0.768
OPUNC12G15550
Oryza punctata
OPUNC12G15550
I
0.768
Si038848m.g
Setaria italica
Si038848m.g
I
0.768
VIT_14s0108g01220
Vitis vinifera
VIT_14s0108g01220
I
0.768
MDP0000276536
Malus domestica
MDP0000276536
I
0.768
Gorai.006G013600
Gossypium raimondii
Gorai.006G013600
I
0.768
MDP0000551969
Malus domestica
MDP0000551969
I
0.768
orange1.1g046337m.g
Citrus sinensis
orange1.1g046337m.g
I
0.768
PK13330.1
Cannabis sativa
PK13330.1
I
0.768
SapurV1A.0322s0110
Salix purpurea
SapurV1A.0322s0110
I
0.768
gene04400-v1.0-hybrid
Fragaria vesca
gene04400-v1.0-hybrid
I
0.768
evm.TU.supercontig_14.126
Carica papaya
evm.TU.supercontig_14.126
I
0.768
MLOC_7255
Hordeum vulgare
MLOC_7255
I
0.768
Traes_5DS_1BDB9837E
Triticum aestivum
Traes_5DS_1BDB9837E
I
0.768
Pm015931
Prunus mume
Pm015931
I
0.768
29635.m000461
Ricinus communis
29635.m000461
I
0.768
Ciclev10013796m.g
Citrus clementina
Ciclev10013796m.g
I
0.768
TCM_018659
Theobroma cacao
TCM_018659
I
0.768
Ca_10494
Cicer arietinum
Ca_10494
I
0.768
GLYMA19G03165
Glycine max
GLYMA19G03165
I
0.768
BGIOSGA037681
Oryza indica
BGIOSGA037681
I
0.768
GSMUA_Achr4G28070_001
Musa acuminata
GSMUA_Achr4G28070_001
I
0.768
GLYMA19G03120
Glycine max
GLYMA19G03120
I
0.768
F775_02727
Aegilops tauschii
F775_02727
I
0.768
GRMZM2G039112
Zea mays
GRMZM2G039112
I
0.768
Lus10037137.g
Linum usitatissimum
Lus10037137.g
I
0.767
Lus10036793.g
Linum usitatissimum
Lus10036793.g
I
0.767
Si024417m.g
Setaria italica
Si024417m.g
I
0.765
Pavir.Ia01300
Panicum virgatum
Pavir.Ia01300
I
0.765
Pavir.Cb00448
Panicum virgatum
Pavir.Cb00448
I
0.765
Lus10001298.g
Linum usitatissimum
Lus10001298.g
I
0.765
Sb01g014810
Sorghum bicolor
Sb01g014810
I
0.765
Lus10012703.g
Linum usitatissimum
Lus10012703.g
I
0.765
GRMZM2G010100
Zea mays
GRMZM2G010100
I
0.765
Cla010474
Citrullus lanatus
Cla010474
I
0.765
cassava4942.m1
Manihot esculenta
cassava4942.m1
I
0.765
cassava1773.valid.m1
Manihot esculenta
cassava1773.valid.m1
I
0.765
Pavir.J28151
Panicum virgatum
Pavir.J28151
I
0.765
Pavir.J28133
Panicum virgatum
Pavir.J28133
I
0.765
Cucsa.158080
Cucumis sativus
Cucsa.158080
I
0.765
Pavir.Ib03934
Panicum virgatum
Pavir.Ib03934
I
0.765
GLYMA13G05690
Glycine max
GLYMA13G05690
I
0.764
Aquca_002_00706
Aquilegia coerulea
Aquca_002_00706
I
0.760
MTR_7g011630
Medicago truncatula
MTR_7g011630
I
0.760
PGSC0003DMG400025151
Solanum tuberosum
PGSC0003DMG400025151
I
0.759
GLYMA18G49761
Glycine max
GLYMA18G49761
I
0.759
cassava9290.m1
Manihot esculenta
cassava9290.m1
I
0.754
Solyc02g067020.1
Solanum lycopersicum
Solyc02g067020.1
I
0.754
Eucgr.B03605
Eucalyptus grandis
Eucgr.B03605
I
0.753
Eucgr.I02007
Eucalyptus grandis
Eucgr.I02007
I
0.751
SapurV1A.1886s0020
Salix purpurea
SapurV1A.1886s0020
I
0.750
Lus10030430.g
Linum usitatissimum
Lus10030430.g
I
0.749
F775_04303
Aegilops tauschii
F775_04303
I
0.748
Si033237m.g
Setaria italica
Si033237m.g
I
0.744
Sb02g006023
Sorghum bicolor
Sb02g006023
I
0.744
Pavir.Ba03636
Panicum virgatum
Pavir.Ba03636
I
0.743
AMTR_s00068p00102110
Amborella trichopoda
AMTR_s00068p00102110
I
0.742
RAP2.11
Vitis vinifera
VIT_08s0007g07250
I
0.741
Ca_08232
Cicer arietinum
Ca_08232
I
0.741
Bra002262
Brassica rapa
Bra002262
I
0.741
OGLUM07G06400
Oryza glumaepatula
OGLUM07G06400
I
0.741
SapurV1A.0918s0170
Salix purpurea
SapurV1A.0918s0170
I
0.741
GSMUA_Achr4G28640_001
Musa acuminata
GSMUA_Achr4G28640_001
I
0.741
TCM_025913
Theobroma cacao
TCM_025913
I
0.741
TCM_040015
Theobroma cacao
TCM_040015
I
0.741
RAP2-11
Arabidopsis thaliana
AT5G19790
D
0.741
Carubv10002733m.g
Capsella rubella
Carubv10002733m.g
I
0.741
Bostr.26527s0221
Boechera stricta
Bostr.26527s0221
I
0.741
LPERR07G05890
Leersia perrieri
LPERR07G05890
I
0.741
OLONG_022569
Oryza longistaminata
OLONG_022569
I
0.741
Pm025326
Prunus mume
Pm025326
I
0.741
Cagra.1268s0022
Capsella grandiflora
Cagra.1268s0022
I
0.741
Bo9g152440
Brassica oleracea
Bo9g152440
I
0.741
chr1.CM0371.120.nc
Lotus japonicus
chr1.CM0371.120.nc
I
0.741
ONIVA01G29960
Oryza nivara
ONIVA01G29960
I
0.741
30084.m000185
Ricinus communis
30084.m000185
I
0.741
Bra006518
Brassica rapa
Bra006518
I
0.741
Bo3g013830
Brassica oleracea
Bo3g013830
I
0.741
Bra020063
Brassica rapa
Bra020063
I
0.741
evm.TU.supercontig_51.136
Carica papaya
evm.TU.supercontig_51.136
I
0.741
OBART07G06690
Oryza barthii
OBART07G06690
I
0.741
GLYMA19G29000
Glycine max
GLYMA19G29000
I
0.741
ORUFI07G06610
Oryza rufipogon
ORUFI07G06610
I
0.741
Thhalv10015715m.g
Eutrema salsugineum
Thhalv10015715m.g
I
0.741
PRUPE_ppa016109mg
Prunus persica
PRUPE_ppa016109mg
I
0.741
MDP0000177547
Malus domestica
MDP0000177547
I
0.741
RAP2.11
Arabidopsis lyrata
scaffold_602074.1
I
0.741
ORGLA07G0057000
Oryza glaberrima
ORGLA07G0057000
I
0.741
BGIOSGA025360
Oryza indica
BGIOSGA025360
I
0.741
OS07G0204000
Oryza sativa
OS07G0204000
I
0.741
OB07G15030
Oryza brachyantha
OB07G15030
I
0.741
Bo2g018360
Brassica oleracea
Bo2g018360
I
0.741
GLYMA16G04410
Glycine max
GLYMA16G04410
I
0.741
POPTR_0003s21090
Populus trichocarpa
POPTR_0003s21090
I
0.741
Gorai.013G244500
Gossypium raimondii
Gorai.013G244500
I
0.741
POPTR_0001s04190
Populus trichocarpa
POPTR_0001s04190
I
0.741
MTR_7g085810
Medicago truncatula
MTR_7g085810
I
0.741
Pavir.Bb00676
Panicum virgatum
Pavir.Bb00676
I
0.738
mgf022665m
Mimulus guttatus
mgf022665m
I
0.738
gene16598-v1.0-hybrid
Fragaria vesca
gene16598-v1.0-hybrid
I
0.738
Eucgr.A02109
Eucalyptus grandis
Eucgr.A02109
I
0.737
Aquca_004_00669
Aquilegia coerulea
Aquca_004_00669
I
0.737
OPUNC07G06390
Oryza punctata
OPUNC07G06390
I
0.736
cassava23953.valid.m1
Manihot esculenta
cassava23953.valid.m1
I
0.735
Gorai.008G178900
Gossypium raimondii
Gorai.008G178900
I
0.734
TCM_011632
Theobroma cacao
TCM_011632
I
0.734
LPERR12G14340
Leersia perrieri
LPERR12G14340
I
0.732
AMTR_s00058p00066390
Amborella trichopoda
AMTR_s00058p00066390
I
0.730
Cucsa.334870
Cucumis sativus
Cucsa.334870
I
0.728
orange1.1g023169m.g
Citrus sinensis
orange1.1g023169m.g
I
0.728
orange1.1g043751m.g
Citrus sinensis
orange1.1g043751m.g
I
0.728
Cla012318
Citrullus lanatus
Cla012318
I
0.728
Lus10010652.g
Linum usitatissimum
Lus10010652.g
I
0.728
Ciclev10021611m.g
Citrus clementina
Ciclev10021611m.g
I
0.728
gene24824-v1.0-hybrid
Fragaria vesca
gene24824-v1.0-hybrid
I
0.726
Cucsa.152770
Cucumis sativus
Cucsa.152770
I
0.718
mgf023693m
Mimulus guttatus
mgf023693m
I
0.717
mgf022810m
Mimulus guttatus
mgf022810m
I
0.717
SapurV1A.0081s0430
Salix purpurea
SapurV1A.0081s0430
I
0.715
Cucsa.258020
Cucumis sativus
Cucsa.258020
I
0.711
Cla021590
Citrullus lanatus
Cla021590
I
0.711
Solyc01g005630.1
Solanum lycopersicum
Solyc01g005630.1
I
0.710
VIT_06s0004g00490
Vitis vinifera
VIT_06s0004g00490
I
0.707
PK25269.1
Cannabis sativa
PK25269.1
I
0.707
OMERI09G12500
Oryza meridionalis
OMERI09G12500
I
0.707
OPUNC09G15300
Oryza punctata
OPUNC09G15300
I
0.707
ORUFI09G18220
Oryza rufipogon
ORUFI09G18220
I
0.707
Ca_25424
Cicer arietinum
Ca_25424
I
0.706
BGIOSGA031114
Oryza indica
BGIOSGA031114
I
0.705
ONIVA09G17920
Oryza nivara
ONIVA09G17920
I
0.705
SELMODRAFT_73140
Selaginella moellendorffii
SELMODRAFT_73140
I
0.705
SELMODRAFT_73145
Selaginella moellendorffii
SELMODRAFT_73145
I
0.705
cassava40212.m1
Manihot esculenta
cassava40212.m1
I
0.704
MDP0000138669
Malus domestica
MDP0000138669
I
0.704
PRUPE_ppa022202mg
Prunus persica
PRUPE_ppa022202mg
I
0.704
Lus10036556.g
Linum usitatissimum
Lus10036556.g
I
0.704
POPTR_0014s07280
Populus trichocarpa
POPTR_0014s07280
I
0.704
Pm008788
Prunus mume
Pm008788
I
0.704
SapurV1A.2432s0010
Salix purpurea
SapurV1A.2432s0010
I
0.704
GRMZM2G018138
Zea mays
GRMZM2G018138
I
0.704
mgf018851m
Mimulus guttatus
mgf018851m
I
0.704
orange1.1g037119m.g
Citrus sinensis
orange1.1g037119m.g
I
0.704
Sb02g030350
Sorghum bicolor
Sb02g030350
I
0.704
MDP0000133476
Malus domestica
MDP0000133476
I
0.704
Ciclev10023764m.g
Citrus clementina
Ciclev10023764m.g
I
0.704
Gorai.008G116800
Gossypium raimondii
Gorai.008G116800
I
0.704
gene16905-v1.0-hybrid
Fragaria vesca
gene16905-v1.0-hybrid
I
0.704
TCM_005425
Theobroma cacao
TCM_005425
I
0.704
Lus10041372.g
Linum usitatissimum
Lus10041372.g
I
0.703
OB09G23520
Oryza brachyantha
OB09G23520
I
0.703
MTR_8g032610
Medicago truncatula
MTR_8g032610
I
0.702
GLYMA03G01931
Glycine max
GLYMA03G01931
I
0.702
GLYMA07G08542
Glycine max
GLYMA07G08542
I
0.702
Pavir.Ba01277
Panicum virgatum
Pavir.Ba01277
I
0.702
GSMUA_Achr3G12350_001
Musa acuminata
GSMUA_Achr3G12350_001
I
0.702
Si032213m.g
Setaria italica
Si032213m.g
I
0.702
AMTR_s00069p00132820
Amborella trichopoda
AMTR_s00069p00132820
I
0.702
Ca_16397
Cicer arietinum
Ca_16397
I
0.702
30174.m008961
Ricinus communis
30174.m008961
I
0.701
Gorai.007G260900
Gossypium raimondii
Gorai.007G260900
I
0.701
MTR_4g082345
Medicago truncatula
MTR_4g082345
I
0.701
cassava9303.m1
Manihot esculenta
cassava9303.m1
I
0.698
Gorai.013G115000
Gossypium raimondii
Gorai.013G115000
I
0.694
LPERR09G12960
Leersia perrieri
LPERR09G12960
I
0.694
OGLUM09G17450
Oryza glumaepatula
OGLUM09G17450
I
0.694
MDP0000128326
Malus domestica
MDP0000128326
I
0.691
BRADI1G54450
Brachypodium distachyon
BRADI1G54450
I
0.690
MDP0000525933
Malus domestica
MDP0000525933
I
0.690
PRUPE_ppa025828mg
Prunus persica
PRUPE_ppa025828mg
I
0.690
Pm000004
Prunus mume
Pm000004
I
0.690
MLOC_18783
Hordeum vulgare
MLOC_18783
I
0.690
Solyc01g091760.2
Solanum lycopersicum
Solyc01g091760.2
I
0.689
PGSC0003DMG400017051
Solanum tuberosum
PGSC0003DMG400017051
I
0.689
cassava28630.m1
Manihot esculenta
cassava28630.m1
I
0.688
evm.TU.supercontig_18.194
Carica papaya
evm.TU.supercontig_18.194
I
0.688
cassava4119.m1
Manihot esculenta
cassava4119.m1
I
0.686
30174.m009031
Ricinus communis
30174.m009031
I
0.685
Lus10013614.g
Linum usitatissimum
Lus10013614.g
I
0.683
Ciclev10023360m.g
Citrus clementina
Ciclev10023360m.g
I
0.683
TCM_015579
Theobroma cacao
TCM_015579
I
0.683
MTR_6g029180
Medicago truncatula
MTR_6g029180
I
0.683
Gorai.008G261800
Gossypium raimondii
Gorai.008G261800
I
0.683
orange1.1g016393m.g
Citrus sinensis
orange1.1g016393m.g
I
0.683
Lus10039171.g
Linum usitatissimum
Lus10039171.g
I
0.681
Lus10013764.g
Linum usitatissimum
Lus10013764.g
I
0.679
MDP0000157628
Malus domestica
MDP0000157628
I
0.678
PRUPE_ppa018710mg
Prunus persica
PRUPE_ppa018710mg
I
0.678
MDP0000197375
Malus domestica
MDP0000197375
I
0.678
Pm030235
Prunus mume
Pm030235
I
0.678