Lus10013764.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10013764.g T008791_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.746 0.882
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.746 0.882
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013764 AP2 18 69

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

269 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.831
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.784
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.784
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.781
Ca_00417 Cicer arietinum Ca_00417 I 0.778
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.773
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.773
PK28640.1 Cannabis sativa PK28640.1 I 0.773
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.761
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.760
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.760
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.756
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.753
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.753
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.748
mgf022665m Mimulus guttatus mgf022665m I 0.748
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.747
TCM_040015 Theobroma cacao TCM_040015 I 0.747
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.747
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.747
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.747
OS07G0204000 Oryza sativa OS07G0204000 I 0.747
OB07G15030 Oryza brachyantha OB07G15030 I 0.747
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.747
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.747
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.747
OBART07G06690 Oryza barthii OBART07G06690 I 0.747
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.747
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.746
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.746
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.746
MDP0000177547 Malus domestica MDP0000177547 I 0.746
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.746
30084.m000185 Ricinus communis 30084.m000185 I 0.746
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.746
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.746
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.746
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.746
Pm025326 Prunus mume Pm025326 I 0.746
Ca_08232 Cicer arietinum Ca_08232 I 0.746
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.746
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.746
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.746
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.746
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.746
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.746
TCM_025913 Theobroma cacao TCM_025913 I 0.746
Bra006518 Brassica rapa Bra006518 I 0.746
Bra020063 Brassica rapa Bra020063 I 0.746
Bo3g013830 Brassica oleracea Bo3g013830 I 0.746
Bra002262 Brassica rapa Bra002262 I 0.746
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.746
Bo9g152440 Brassica oleracea Bo9g152440 I 0.746
Bo2g018360 Brassica oleracea Bo2g018360 I 0.746
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.746
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.746
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.745
Si033237m.g Setaria italica Si033237m.g I 0.744
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.744
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.743
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.743
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.743
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.742
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.742
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.742
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.741
30174.m009031 Ricinus communis 30174.m009031 I 0.741
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.741
MDP0000127123 Malus domestica MDP0000127123 N 0.740
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.739
mgf024137m Mimulus guttatus mgf024137m N 0.739
PK25269.1 Cannabis sativa PK25269.1 I 0.739
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.739
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.738
MTR_4g111915 Medicago truncatula MTR_4g111915 N 0.738
MTR_4g112490 Medicago truncatula MTR_4g112490 N 0.738
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.737
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.737
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.737
Cla010474 Citrullus lanatus Cla010474 I 0.737
Si024417m.g Setaria italica Si024417m.g I 0.737
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.737
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.737
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.737
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.737
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.737
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.737
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.737
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.737
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.737
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.737
TCM_011632 Theobroma cacao TCM_011632 I 0.735
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.735
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.735
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.735
MDP0000525933 Malus domestica MDP0000525933 I 0.735
Pm000004 Prunus mume Pm000004 I 0.735
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.735
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.734
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.734
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.734
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.734
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.734
Si038848m.g Setaria italica Si038848m.g I 0.734
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.734
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.734
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.734
F775_02727 Aegilops tauschii F775_02727 I 0.734
29635.m000461 Ricinus communis 29635.m000461 I 0.734
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.734
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.734
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.734
Ca_10494 Cicer arietinum Ca_10494 I 0.734
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.734
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.734
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.734
Pm015931 Prunus mume Pm015931 I 0.734
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.734
MDP0000551969 Malus domestica MDP0000551969 I 0.734
MDP0000276536 Malus domestica MDP0000276536 I 0.734
TCM_018659 Theobroma cacao TCM_018659 I 0.734
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.734
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.734
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.734
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.734
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.734
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.734
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.734
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.734
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.734
OS12G0582900 Oryza sativa OS12G0582900 I 0.734
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.734
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.734
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.734
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.734
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.734
PK13330.1 Cannabis sativa PK13330.1 I 0.734
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.734
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.734
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.734
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.734
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.734
OBART12G17080 Oryza barthii OBART12G17080 I 0.734
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.734
Cla012318 Citrullus lanatus Cla012318 I 0.733
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.733
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.733
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.733
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.733
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.732
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.732
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.732
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.732
29813.m001543 Ricinus communis 29813.m001543 I 0.732
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.732
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.732
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.732
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.731
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.731
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.731
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.731
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.731
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.730
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.730
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.730
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.730
Ca_06590 Cicer arietinum Ca_06590 N 0.730
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.730
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.729
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.729
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.729
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.728
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.728
Pm008788 Prunus mume Pm008788 I 0.727
TCM_005425 Theobroma cacao TCM_005425 I 0.727
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.727
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.727
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.727
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.727
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.727
MDP0000138669 Malus domestica MDP0000138669 I 0.727
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.727
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.727
MDP0000133476 Malus domestica MDP0000133476 I 0.727
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.727
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.727
mgf018851m Mimulus guttatus mgf018851m I 0.727
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.727
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.726
MDP0000316843 Malus domestica MDP0000316843 N 0.726
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.726
Si032213m.g Setaria italica Si032213m.g I 0.726
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.725
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.723
30174.m008961 Ricinus communis 30174.m008961 I 0.723
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.722
Si030686m.g Setaria italica Si030686m.g I 0.722
mgf022810m Mimulus guttatus mgf022810m I 0.722
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.722
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.722
mgf023693m Mimulus guttatus mgf023693m I 0.722
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.722
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.721
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.720
OBART07G19610 Oryza barthii OBART07G19610 I 0.720
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.720
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.720
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.720
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.720
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.720
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.720
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.720
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.720
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.720
OS07G0575000 Oryza sativa OS07G0575000 I 0.720
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.720
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.720
Ca_25424 Cicer arietinum Ca_25424 I 0.715
MDP0000157628 Malus domestica MDP0000157628 I 0.714
MDP0000197375 Malus domestica MDP0000197375 I 0.714
Pm030235 Prunus mume Pm030235 I 0.714
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.714
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.714
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.714
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.713
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.713
Ca_16397 Cicer arietinum Ca_16397 I 0.712
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.712
TCM_014471 Theobroma cacao TCM_014471 I 0.712
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.712
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.712
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.712
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.711
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.711
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.710
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.705
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.702
Cla021590 Citrullus lanatus Cla021590 I 0.701
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.701
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.700
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.699
OB09G23520 Oryza brachyantha OB09G23520 I 0.699
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.698
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.698
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.698
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.697
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.696
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.696
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.695
F775_04303 Aegilops tauschii F775_04303 I 0.695
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.692
TCM_015579 Theobroma cacao TCM_015579 I 0.690
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.690
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.690
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.690
Cla019296 Citrullus lanatus Cla019296 N 0.687
Cucsa.198700 Cucumis sativus Cucsa.198700 N 0.687
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.687
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.687
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.685
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.684
30068.m002623 Ricinus communis 30068.m002623 I 0.684
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.684
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.683
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.682
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.682
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.679
MDP0000128326 Malus domestica MDP0000128326 I 0.679
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.678