Gorai.008G178900 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.008G178900 T008619_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.758 0.824
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.758 0.824
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.008G178900.1 AP2 46 97

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_011632 Theobroma cacao TCM_011632 I 0.817
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.788
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.788
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.788
29813.m001543 Ricinus communis 29813.m001543 I 0.788
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.786
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.786
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.786
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.786
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.786
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.786
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.786
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.786
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.786
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.786
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.786
Ca_10494 Cicer arietinum Ca_10494 I 0.786
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.786
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.786
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.786
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.786
Pm015931 Prunus mume Pm015931 I 0.786
OBART12G17080 Oryza barthii OBART12G17080 I 0.786
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.786
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.786
29635.m000461 Ricinus communis 29635.m000461 I 0.786
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.786
OS12G0582900 Oryza sativa OS12G0582900 I 0.786
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.786
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.786
TCM_018659 Theobroma cacao TCM_018659 I 0.786
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.786
MDP0000551969 Malus domestica MDP0000551969 I 0.786
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.786
F775_02727 Aegilops tauschii F775_02727 I 0.786
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.786
MDP0000276536 Malus domestica MDP0000276536 I 0.786
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.786
Si038848m.g Setaria italica Si038848m.g I 0.786
PK13330.1 Cannabis sativa PK13330.1 I 0.786
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.786
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.784
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.784
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.782
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.782
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.782
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.782
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.782
Cla010474 Citrullus lanatus Cla010474 I 0.782
Si024417m.g Setaria italica Si024417m.g I 0.782
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.782
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.782
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.782
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.782
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.782
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.782
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.782
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.781
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.780
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.777
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.777
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.776
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.776
MDP0000525933 Malus domestica MDP0000525933 I 0.773
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.773
Pm000004 Prunus mume Pm000004 I 0.773
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.771
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.771
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.770
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.768
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.768
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.766
PK25269.1 Cannabis sativa PK25269.1 I 0.763
Si033237m.g Setaria italica Si033237m.g I 0.761
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.761
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.761
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.759
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.758
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.758
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.758
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.758
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.758
MDP0000177547 Malus domestica MDP0000177547 I 0.758
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.758
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.758
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.758
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.758
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.758
Ca_08232 Cicer arietinum Ca_08232 I 0.758
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.758
Pm025326 Prunus mume Pm025326 I 0.758
30084.m000185 Ricinus communis 30084.m000185 I 0.758
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.758
TCM_040015 Theobroma cacao TCM_040015 I 0.758
TCM_025913 Theobroma cacao TCM_025913 I 0.758
Bra020063 Brassica rapa Bra020063 I 0.758
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.758
Bra006518 Brassica rapa Bra006518 I 0.758
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.758
Bo9g152440 Brassica oleracea Bo9g152440 I 0.758
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.758
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.758
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.758
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.758
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.758
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.758
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.758
Bra002262 Brassica rapa Bra002262 I 0.758
OB07G15030 Oryza brachyantha OB07G15030 I 0.758
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.758
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.758
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.758
OBART07G06690 Oryza barthii OBART07G06690 I 0.758
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.758
OS07G0204000 Oryza sativa OS07G0204000 I 0.758
Bo3g013830 Brassica oleracea Bo3g013830 I 0.758
Bo2g018360 Brassica oleracea Bo2g018360 I 0.758
mgf022665m Mimulus guttatus mgf022665m I 0.756
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.755
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.755
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.754
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.754
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.753
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.752
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.752
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.752
Cla021590 Citrullus lanatus Cla021590 I 0.752
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.752
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.752
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.750
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.750
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.749
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.749
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.749
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.749
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.749
Pm008788 Prunus mume Pm008788 I 0.749
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.749
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.749
MDP0000138669 Malus domestica MDP0000138669 I 0.749
mgf018851m Mimulus guttatus mgf018851m I 0.749
TCM_005425 Theobroma cacao TCM_005425 I 0.749
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.749
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.749
MDP0000133476 Malus domestica MDP0000133476 I 0.749
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.749
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.749
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.748
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.747
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.747
Si032213m.g Setaria italica Si032213m.g I 0.747
F775_04303 Aegilops tauschii F775_04303 I 0.747
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.746
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.745
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.745
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.745
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.745
30174.m008961 Ricinus communis 30174.m008961 I 0.745
Cla012318 Citrullus lanatus Cla012318 I 0.745
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.745
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.744
OB09G23520 Oryza brachyantha OB09G23520 I 0.744
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.741
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.741
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.739
Ca_25424 Cicer arietinum Ca_25424 I 0.739
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.739
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.738
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.737
30174.m009031 Ricinus communis 30174.m009031 I 0.736
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.735
mgf023693m Mimulus guttatus mgf023693m I 0.734
mgf022810m Mimulus guttatus mgf022810m I 0.734
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.734
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.734
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.733
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.733
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.733
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.733
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.732
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.732
Ca_16397 Cicer arietinum Ca_16397 I 0.729
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.729
MDP0000157628 Malus domestica MDP0000157628 I 0.729
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.729
Pm030235 Prunus mume Pm030235 I 0.729
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.729
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.729
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.729
MDP0000197375 Malus domestica MDP0000197375 I 0.729
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.727
TCM_014471 Theobroma cacao TCM_014471 I 0.726
Ca_00417 Cicer arietinum Ca_00417 I 0.725
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.724
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.723
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.722
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.722
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.722
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.722
Si027288m.g Setaria italica Si027288m.g I 0.719
TCM_015579 Theobroma cacao TCM_015579 I 0.716
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.716
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.716
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.716
PK28640.1 Cannabis sativa PK28640.1 I 0.712
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.711
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.710
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.709
MDP0000128326 Malus domestica MDP0000128326 I 0.709
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.708
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.707
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.707
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.706
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.706
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.706
30068.m002623 Ricinus communis 30068.m002623 I 0.705
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.701
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.700
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.698
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.697
e_gw1.195.59.1 Physcomitrella patens e_gw1.195.59.1 N 0.697
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.696
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.696
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.695
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.695
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.695
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.694
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.693
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.689
OBART07G19610 Oryza barthii OBART07G19610 I 0.689
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.689
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.689
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.689
OS07G0575000 Oryza sativa OS07G0575000 I 0.689
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.689
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.689
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.689
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.689
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.689
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.688
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.687
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.687
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.687
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.685
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.685
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.685
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.685
Si030686m.g Setaria italica Si030686m.g I 0.685
MDP0000127123 Malus domestica MDP0000127123 N 0.685
Cla005054 Citrullus lanatus Cla005054 N 0.685
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.685
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.684
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.683
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.683
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.683
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.683
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.683
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.683
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.683
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.680
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.679
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.679
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.678
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.678
MDP0000172804 Malus domestica MDP0000172804 I 0.678
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.677