Solyc01g005630.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc01g005630.1 T005393_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.776 0.922
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.776 0.922
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g005630.1.1 AP2 17 68

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
mgf023693m Mimulus guttatus mgf023693m I 0.812
mgf022810m Mimulus guttatus mgf022810m I 0.812
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.802
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.789
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.789
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.784
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.776
MDP0000177547 Malus domestica MDP0000177547 I 0.776
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.776
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.776
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.776
OS07G0204000 Oryza sativa OS07G0204000 I 0.776
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.776
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.776
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.776
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.776
OB07G15030 Oryza brachyantha OB07G15030 I 0.776
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.776
OBART07G06690 Oryza barthii OBART07G06690 I 0.776
TCM_025913 Theobroma cacao TCM_025913 I 0.776
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.776
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.776
30084.m000185 Ricinus communis 30084.m000185 I 0.776
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.776
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.776
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.776
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.776
Bo3g013830 Brassica oleracea Bo3g013830 I 0.776
Bo9g152440 Brassica oleracea Bo9g152440 I 0.776
Bra002262 Brassica rapa Bra002262 I 0.776
Bra006518 Brassica rapa Bra006518 I 0.776
Bo2g018360 Brassica oleracea Bo2g018360 I 0.776
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.776
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.776
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.776
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.776
Ca_08232 Cicer arietinum Ca_08232 I 0.776
Bra020063 Brassica rapa Bra020063 I 0.776
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.776
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.776
Pm025326 Prunus mume Pm025326 I 0.776
TCM_040015 Theobroma cacao TCM_040015 I 0.776
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.776
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.776
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.776
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.776
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.774
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.774
mgf022665m Mimulus guttatus mgf022665m I 0.773
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.773
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.773
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.772
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.772
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.772
Si033237m.g Setaria italica Si033237m.g I 0.772
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.772
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.771
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.770
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.769
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.768
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.768
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.768
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.768
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.768
Cla010474 Citrullus lanatus Cla010474 I 0.768
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.768
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.768
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.768
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.768
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.768
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.768
Si024417m.g Setaria italica Si024417m.g I 0.768
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.768
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.767
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.767
TCM_018659 Theobroma cacao TCM_018659 I 0.765
Si038848m.g Setaria italica Si038848m.g I 0.765
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.765
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.765
MDP0000551969 Malus domestica MDP0000551969 I 0.765
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.765
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.765
PK13330.1 Cannabis sativa PK13330.1 I 0.765
MDP0000276536 Malus domestica MDP0000276536 I 0.765
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.765
Pm015931 Prunus mume Pm015931 I 0.765
29635.m000461 Ricinus communis 29635.m000461 I 0.765
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.765
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.765
Ca_10494 Cicer arietinum Ca_10494 I 0.765
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.765
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.765
OS12G0582900 Oryza sativa OS12G0582900 I 0.765
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.765
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.765
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.765
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.765
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.765
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.765
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.765
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.765
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.765
OBART12G17080 Oryza barthii OBART12G17080 I 0.765
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.765
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.765
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.765
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.765
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.765
F775_02727 Aegilops tauschii F775_02727 I 0.765
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.765
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.765
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.765
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.763
29813.m001543 Ricinus communis 29813.m001543 I 0.763
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.763
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.763
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.763
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.763
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.763
Cla012318 Citrullus lanatus Cla012318 I 0.763
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.762
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.762
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.762
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.762
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.761
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.761
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.759
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.759
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.755
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.750
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.742
MDP0000128326 Malus domestica MDP0000128326 I 0.739
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.737
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.737
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.735
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.727
TCM_011632 Theobroma cacao TCM_011632 I 0.727
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.727
F775_04303 Aegilops tauschii F775_04303 I 0.726
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.725
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.725
Pm000004 Prunus mume Pm000004 I 0.725
MDP0000525933 Malus domestica MDP0000525933 I 0.725
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.718
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.716
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.713
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.713
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.712
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.710
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.707
PK25269.1 Cannabis sativa PK25269.1 I 0.704
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.704
30174.m009031 Ricinus communis 30174.m009031 I 0.703
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.701
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.701
Cla021590 Citrullus lanatus Cla021590 I 0.701
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.699
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.698
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.698
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.698
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.697
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.697
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.697
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.697
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.696
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.696
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.695
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.695
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.694
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.694
MDP0000138669 Malus domestica MDP0000138669 I 0.694
MDP0000133476 Malus domestica MDP0000133476 I 0.694
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.694
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.694
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.694
mgf018851m Mimulus guttatus mgf018851m I 0.694
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.694
Pm008788 Prunus mume Pm008788 I 0.694
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.694
TCM_005425 Theobroma cacao TCM_005425 I 0.694
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.694
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.694
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.694
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.693
Si032213m.g Setaria italica Si032213m.g I 0.693
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.693
OB09G23520 Oryza brachyantha OB09G23520 I 0.693
MDP0000197375 Malus domestica MDP0000197375 I 0.693
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.693
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.693
MDP0000157628 Malus domestica MDP0000157628 I 0.693
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.693
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.692
30174.m008961 Ricinus communis 30174.m008961 I 0.690
Pm030235 Prunus mume Pm030235 I 0.689
TCM_014471 Theobroma cacao TCM_014471 I 0.688
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.687
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.687
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.686
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.685
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.685
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.682
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.681
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.681
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.681
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.680
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.680
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.679
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.679
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.678
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.678
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.678
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.678
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.677