cassava4119.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava4119.m1 T006925_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.714 0.706
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.714 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava4119.m1 AP2 44 95

Links

Other AP2 family TFs
Other Manihot esculenta TFs

238 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.803
30174.m009031 Ricinus communis 30174.m009031 I 0.788
TCM_014471 Theobroma cacao TCM_014471 I 0.777
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.773
Pm030235 Prunus mume Pm030235 I 0.772
MDP0000197375 Malus domestica MDP0000197375 I 0.772
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.772
MDP0000157628 Malus domestica MDP0000157628 I 0.772
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.768
PK25269.1 Cannabis sativa PK25269.1 I 0.759
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.756
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.754
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.754
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.754
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.752
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.752
PK28640.1 Cannabis sativa PK28640.1 I 0.751
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.750
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.750
mgf018851m Mimulus guttatus mgf018851m I 0.750
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.750
30174.m008961 Ricinus communis 30174.m008961 I 0.750
Pm008788 Prunus mume Pm008788 I 0.750
MDP0000133476 Malus domestica MDP0000133476 I 0.750
TCM_005425 Theobroma cacao TCM_005425 I 0.750
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.750
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.750
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.750
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.750
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.750
MDP0000138669 Malus domestica MDP0000138669 I 0.750
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.750
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.748
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.746
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.746
Si032213m.g Setaria italica Si032213m.g I 0.744
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.744
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.742
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.741
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.740
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.739
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.739
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.738
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.738
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.737
TCM_011632 Theobroma cacao TCM_011632 I 0.737
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.737
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.735
TCM_018659 Theobroma cacao TCM_018659 I 0.735
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.735
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.735
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.735
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.735
Si038848m.g Setaria italica Si038848m.g I 0.735
Si024417m.g Setaria italica Si024417m.g I 0.735
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.735
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.735
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.735
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.735
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.735
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.735
MDP0000551969 Malus domestica MDP0000551969 I 0.735
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.735
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.735
PK13330.1 Cannabis sativa PK13330.1 I 0.735
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.735
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.735
MDP0000276536 Malus domestica MDP0000276536 I 0.735
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.735
29635.m000461 Ricinus communis 29635.m000461 I 0.735
Pm015931 Prunus mume Pm015931 I 0.735
Cla010474 Citrullus lanatus Cla010474 I 0.735
Ca_10494 Cicer arietinum Ca_10494 I 0.735
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.735
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.735
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.735
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.735
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.735
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.735
Ca_16397 Cicer arietinum Ca_16397 I 0.735
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.735
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.735
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.735
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.735
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.735
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.735
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.735
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.735
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.735
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.735
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.735
OBART12G17080 Oryza barthii OBART12G17080 I 0.735
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.735
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.735
OS12G0582900 Oryza sativa OS12G0582900 I 0.735
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.735
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.735
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.735
F775_02727 Aegilops tauschii F775_02727 I 0.735
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.735
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.735
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.734
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.734
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.734
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.734
29813.m001543 Ricinus communis 29813.m001543 I 0.734
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.734
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.734
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.734
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.733
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.732
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.731
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.731
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.729
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.729
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.727
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.727
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.726
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.726
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.725
Ca_00417 Cicer arietinum Ca_00417 I 0.725
Cla021590 Citrullus lanatus Cla021590 I 0.724
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.724
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.724
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.724
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.724
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.723
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.723
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.723
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.723
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.720
Ca_25424 Cicer arietinum Ca_25424 I 0.719
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.718
mgf022665m Mimulus guttatus mgf022665m I 0.717
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.716
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.716
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.716
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.715
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.715
MDP0000177547 Malus domestica MDP0000177547 I 0.715
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.715
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.715
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.715
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.715
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.715
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.715
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.715
OB09G23520 Oryza brachyantha OB09G23520 I 0.715
Pm025326 Prunus mume Pm025326 I 0.715
Ca_08232 Cicer arietinum Ca_08232 I 0.715
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.715
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.715
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.715
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.715
TCM_025913 Theobroma cacao TCM_025913 I 0.715
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.715
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.714
Si033237m.g Setaria italica Si033237m.g I 0.714
Bo3g013830 Brassica oleracea Bo3g013830 I 0.714
Bo2g018360 Brassica oleracea Bo2g018360 I 0.714
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.714
OS07G0204000 Oryza sativa OS07G0204000 I 0.714
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.714
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.714
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.714
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.714
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.714
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.714
TCM_040015 Theobroma cacao TCM_040015 I 0.714
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.714
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.714
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.714
Bra006518 Brassica rapa Bra006518 I 0.714
30084.m000185 Ricinus communis 30084.m000185 I 0.714
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.714
Bra002262 Brassica rapa Bra002262 I 0.714
Bo9g152440 Brassica oleracea Bo9g152440 I 0.714
OB07G15030 Oryza brachyantha OB07G15030 I 0.714
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.714
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.714
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.714
OBART07G06690 Oryza barthii OBART07G06690 I 0.714
Bra020063 Brassica rapa Bra020063 I 0.714
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.714
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.713
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.713
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.712
TCM_015579 Theobroma cacao TCM_015579 I 0.712
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.712
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.712
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.711
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.707
Gorai.001G064900 Gossypium raimondii Gorai.001G064900 N 0.707
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.707
30068.m002623 Ricinus communis 30068.m002623 I 0.706
MTR_4g111915 Medicago truncatula MTR_4g111915 N 0.705
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.705
MTR_4g112490 Medicago truncatula MTR_4g112490 N 0.705
MDP0000525933 Malus domestica MDP0000525933 I 0.704
Pm000004 Prunus mume Pm000004 I 0.704
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.704
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.702
F775_04303 Aegilops tauschii F775_04303 I 0.702
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.701
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.701
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.701
Cla012318 Citrullus lanatus Cla012318 I 0.701
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.701
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.701
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.700
Ca_06590 Cicer arietinum Ca_06590 N 0.697
mgf022810m Mimulus guttatus mgf022810m I 0.696
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.696
mgf023693m Mimulus guttatus mgf023693m I 0.696
MDP0000316843 Malus domestica MDP0000316843 N 0.694
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.689
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.688
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.688
Si027288m.g Setaria italica Si027288m.g I 0.687
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.686
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.685
Cla005054 Citrullus lanatus Cla005054 N 0.685
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.685
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.685
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.681
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.681
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.681
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.680
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.679
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.679
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.679
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.679
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.679
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.678
MDP0000127123 Malus domestica MDP0000127123 N 0.678
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.678
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.678
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.678