30068.m002623 (Ricinus communis)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 30068.m002623 T006742_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.680 0.735
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.680 0.735
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30068.m002623 AP2 51 102

Links

Other AP2 family TFs
Other Ricinus communis TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_015579 Theobroma cacao TCM_015579 I 0.768
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.768
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.768
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.768
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.757
PK25269.1 Cannabis sativa PK25269.1 I 0.753
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.751
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.749
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.748
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.747
TCM_005425 Theobroma cacao TCM_005425 I 0.747
mgf018851m Mimulus guttatus mgf018851m I 0.747
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.747
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.747
MDP0000133476 Malus domestica MDP0000133476 I 0.747
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.747
MDP0000138669 Malus domestica MDP0000138669 I 0.747
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.747
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.747
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.747
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.747
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.747
Pm008788 Prunus mume Pm008788 I 0.747
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.746
Si032213m.g Setaria italica Si032213m.g I 0.746
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.744
Ca_16397 Cicer arietinum Ca_16397 I 0.744
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.744
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.744
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.744
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.743
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.743
30174.m008961 Ricinus communis 30174.m008961 I 0.743
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.743
Cla005054 Citrullus lanatus Cla005054 N 0.743
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.740
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.740
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.738
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.736
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.736
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.736
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.735
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.735
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.735
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.734
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.734
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.731
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.731
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.731
MDP0000127123 Malus domestica MDP0000127123 N 0.728
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.726
Ca_25424 Cicer arietinum Ca_25424 I 0.725
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.725
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.724
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.724
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.720
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.720
MDP0000316843 Malus domestica MDP0000316843 N 0.720
Cla021590 Citrullus lanatus Cla021590 I 0.720
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.717
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.714
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.712
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.710
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.710
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.708
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.708
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.706
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.706
Cla010474 Citrullus lanatus Cla010474 I 0.705
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.705
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.705
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.705
Ca_00417 Cicer arietinum Ca_00417 I 0.705
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.705
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.705
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.705
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.705
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.705
TCM_011632 Theobroma cacao TCM_011632 I 0.705
Si024417m.g Setaria italica Si024417m.g I 0.705
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.705
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.705
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.705
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.705
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.704
OB09G23520 Oryza brachyantha OB09G23520 I 0.704
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.703
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.703
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.703
Ca_10494 Cicer arietinum Ca_10494 I 0.703
MDP0000276536 Malus domestica MDP0000276536 I 0.703
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.703
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.703
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.703
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.703
29635.m000461 Ricinus communis 29635.m000461 I 0.703
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.703
F775_02727 Aegilops tauschii F775_02727 I 0.703
Pm015931 Prunus mume Pm015931 I 0.703
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.703
OS12G0582900 Oryza sativa OS12G0582900 I 0.703
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.703
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.703
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.703
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.703
Si038848m.g Setaria italica Si038848m.g I 0.703
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.703
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.703
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.703
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.703
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.703
PK13330.1 Cannabis sativa PK13330.1 I 0.703
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.703
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.703
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.703
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.703
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.703
OBART12G17080 Oryza barthii OBART12G17080 I 0.703
TCM_018659 Theobroma cacao TCM_018659 I 0.703
MDP0000551969 Malus domestica MDP0000551969 I 0.703
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.703
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.703
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.701
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.701
29813.m001543 Ricinus communis 29813.m001543 I 0.701
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.700
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.700
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.699
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.698
mgf024137m Mimulus guttatus mgf024137m N 0.698
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.698
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.696
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.695
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.694
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.694
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.694
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.693
30174.m009031 Ricinus communis 30174.m009031 I 0.693
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.693
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.690
Si027288m.g Setaria italica Si027288m.g I 0.689
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.688
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.688
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.688
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.687
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.686
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.686
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.685
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.684
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.684
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.683
Pm000004 Prunus mume Pm000004 I 0.683
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.683
MDP0000525933 Malus domestica MDP0000525933 I 0.683
TCM_014471 Theobroma cacao TCM_014471 I 0.682
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.682
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.681
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.681
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.681
MDP0000177547 Malus domestica MDP0000177547 I 0.681
Ca_08232 Cicer arietinum Ca_08232 I 0.681
TCM_025913 Theobroma cacao TCM_025913 I 0.681
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.681
Cla012318 Citrullus lanatus Cla012318 I 0.681
Pm025326 Prunus mume Pm025326 I 0.681
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.681
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.681
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.681
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.681
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.681
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.681
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.681
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.681
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.680
OBART07G06690 Oryza barthii OBART07G06690 I 0.680
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.680
Bo2g018360 Brassica oleracea Bo2g018360 I 0.680
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.680
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.680
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.680
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.680
Bo3g013830 Brassica oleracea Bo3g013830 I 0.680
Bra002262 Brassica rapa Bra002262 I 0.680
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.680
Bra006518 Brassica rapa Bra006518 I 0.680
Bo9g152440 Brassica oleracea Bo9g152440 I 0.680
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.680
Bra020063 Brassica rapa Bra020063 I 0.680
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.680
OB07G15030 Oryza brachyantha OB07G15030 I 0.680
OS07G0204000 Oryza sativa OS07G0204000 I 0.680
30084.m000185 Ricinus communis 30084.m000185 I 0.680
Pm030235 Prunus mume Pm030235 I 0.680
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.680
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.680
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.680
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.680
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.680
TCM_040015 Theobroma cacao TCM_040015 I 0.680
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.680
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.680
MDP0000157628 Malus domestica MDP0000157628 I 0.680
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.680
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.680
MDP0000197375 Malus domestica MDP0000197375 I 0.680
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.680
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.679
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.678
mgf022665m Mimulus guttatus mgf022665m I 0.678
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.678
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.678
Si033237m.g Setaria italica Si033237m.g I 0.678
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.677
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.677