Lus10041372.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10041372.g T008932_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.724 0.745
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.724 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041372 AP2 20 71

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

252 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.819
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.819
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.819
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.819
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.819
TCM_005425 Theobroma cacao TCM_005425 I 0.819
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.819
mgf018851m Mimulus guttatus mgf018851m I 0.819
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.819
Pm008788 Prunus mume Pm008788 I 0.819
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.819
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.819
MDP0000133476 Malus domestica MDP0000133476 I 0.819
MDP0000138669 Malus domestica MDP0000138669 I 0.819
30174.m008961 Ricinus communis 30174.m008961 I 0.815
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.812
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.809
Si032213m.g Setaria italica Si032213m.g I 0.809
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.803
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.803
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.803
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.803
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.801
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.799
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.799
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.799
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.797
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.797
Cla021590 Citrullus lanatus Cla021590 I 0.792
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.792
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.792
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.787
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.786
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.786
Ca_16397 Cicer arietinum Ca_16397 I 0.786
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.786
PK25269.1 Cannabis sativa PK25269.1 I 0.777
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.774
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.774
OB09G23520 Oryza brachyantha OB09G23520 I 0.768
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.758
Si027288m.g Setaria italica Si027288m.g I 0.752
30068.m002623 Ricinus communis 30068.m002623 I 0.751
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.750
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.748
TCM_015579 Theobroma cacao TCM_015579 I 0.748
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.748
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.748
TCM_011632 Theobroma cacao TCM_011632 I 0.748
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.748
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.748
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.746
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.745
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.745
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.745
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.745
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.745
Si024417m.g Setaria italica Si024417m.g I 0.745
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.745
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.745
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.745
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.745
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.745
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.745
29813.m001543 Ricinus communis 29813.m001543 I 0.745
Cla010474 Citrullus lanatus Cla010474 I 0.745
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.745
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.745
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.744
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.744
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.743
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.743
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.743
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.743
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.743
F775_02727 Aegilops tauschii F775_02727 I 0.743
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.743
PK13330.1 Cannabis sativa PK13330.1 I 0.743
Pm015931 Prunus mume Pm015931 I 0.743
29635.m000461 Ricinus communis 29635.m000461 I 0.743
Ca_10494 Cicer arietinum Ca_10494 I 0.743
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.743
Si038848m.g Setaria italica Si038848m.g I 0.743
TCM_018659 Theobroma cacao TCM_018659 I 0.743
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.743
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.743
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.743
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.743
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.743
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.743
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.743
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.743
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.743
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.743
OS12G0582900 Oryza sativa OS12G0582900 I 0.743
MDP0000276536 Malus domestica MDP0000276536 I 0.743
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.743
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.743
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.743
MDP0000551969 Malus domestica MDP0000551969 I 0.743
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.743
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.743
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.743
OBART12G17080 Oryza barthii OBART12G17080 I 0.743
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.743
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.743
Ca_25424 Cicer arietinum Ca_25424 I 0.742
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.741
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.741
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.740
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.740
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.740
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.739
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.737
30174.m009031 Ricinus communis 30174.m009031 I 0.737
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.737
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.737
Ca_00417 Cicer arietinum Ca_00417 I 0.734
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.734
POPTR_0002s15480 Populus trichocarpa POPTR_0002s15480 N 0.734
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.733
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.733
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.733
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.730
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.728
MDP0000197375 Malus domestica MDP0000197375 I 0.727
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.727
MDP0000157628 Malus domestica MDP0000157628 I 0.727
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.727
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.727
Pm030235 Prunus mume Pm030235 I 0.727
TCM_014471 Theobroma cacao TCM_014471 I 0.726
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.725
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.725
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.725
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.724
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.724
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.724
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.724
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.724
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.724
30084.m000185 Ricinus communis 30084.m000185 I 0.724
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.724
MDP0000177547 Malus domestica MDP0000177547 I 0.724
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.724
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.724
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.724
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.724
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.724
OBART07G06690 Oryza barthii OBART07G06690 I 0.724
OB07G15030 Oryza brachyantha OB07G15030 I 0.724
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.724
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.724
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.724
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.724
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.724
Pm025326 Prunus mume Pm025326 I 0.724
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.724
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.724
Bo3g013830 Brassica oleracea Bo3g013830 I 0.724
Bo9g152440 Brassica oleracea Bo9g152440 I 0.724
Bo2g018360 Brassica oleracea Bo2g018360 I 0.724
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.724
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.724
Bra002262 Brassica rapa Bra002262 I 0.724
Bra006518 Brassica rapa Bra006518 I 0.724
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.724
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.724
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.724
Bra020063 Brassica rapa Bra020063 I 0.724
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.724
OS07G0204000 Oryza sativa OS07G0204000 I 0.724
TCM_040015 Theobroma cacao TCM_040015 I 0.724
TCM_025913 Theobroma cacao TCM_025913 I 0.724
Ca_08232 Cicer arietinum Ca_08232 I 0.724
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.723
MDP0000127123 Malus domestica MDP0000127123 N 0.723
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.723
Cla005054 Citrullus lanatus Cla005054 N 0.722
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.722
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.722
Si033237m.g Setaria italica Si033237m.g I 0.722
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.721
mgf022665m Mimulus guttatus mgf022665m I 0.721
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.720
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.720
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.719
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.719
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.718
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.718
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.716
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.714
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.714
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.714
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.714
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.714
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.713
MDP0000525933 Malus domestica MDP0000525933 I 0.713
Pm000004 Prunus mume Pm000004 I 0.713
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.712
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.711
Cla012318 Citrullus lanatus Cla012318 I 0.711
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.711
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.710
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.710
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.710
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.710
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.710
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.710
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.710
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.709
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.707
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.707
MDP0000316843 Malus domestica MDP0000316843 N 0.706
PK28640.1 Cannabis sativa PK28640.1 I 0.705
F775_04303 Aegilops tauschii F775_04303 I 0.704
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.704
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.704
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.703
mgf022810m Mimulus guttatus mgf022810m I 0.700
mgf023693m Mimulus guttatus mgf023693m I 0.700
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.700
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.698
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.697
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.697
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.695
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.695
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.695
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.695
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.694
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.693
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.693
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.692
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.690
mgf024137m Mimulus guttatus mgf024137m N 0.690
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.687
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.687
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.684
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.684
Si030686m.g Setaria italica Si030686m.g I 0.681
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.681
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.681
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.681
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.681
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.681
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.681
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.681
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.680
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.679
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.678
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.677
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.677