AMTR_s00003p00165930 (Amborella trichopoda)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 AMTR_s00003p00165930 T000331_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.683 0.706
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.683 0.706
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN03217 AP2 12 63

Links

Other AP2 family TFs
Other Amborella trichopoda TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.763
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.753
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.738
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.735
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.733
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.733
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.732
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.732
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.725
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.725
Ca_00417 Cicer arietinum Ca_00417 I 0.723
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.714
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.710
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.708
MDP0000127123 Malus domestica MDP0000127123 N 0.707
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.707
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.706
TCM_011632 Theobroma cacao TCM_011632 I 0.706
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.706
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.705
mgf024137m Mimulus guttatus mgf024137m N 0.704
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.700
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.700
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.700
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.700
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.700
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.699
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.699
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.698
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.697
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.697
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.697
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.697
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.696
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.695
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.695
Pm000004 Prunus mume Pm000004 I 0.695
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.695
MDP0000525933 Malus domestica MDP0000525933 I 0.695
MDP0000316843 Malus domestica MDP0000316843 N 0.691
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.690
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.690
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.690
29813.m001543 Ricinus communis 29813.m001543 I 0.690
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.690
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.690
Cla021590 Citrullus lanatus Cla021590 I 0.690
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.690
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.688
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.688
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.688
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.688
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.688
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.688
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.688
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.688
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.688
Si038848m.g Setaria italica Si038848m.g I 0.688
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.688
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.688
TCM_018659 Theobroma cacao TCM_018659 I 0.688
OBART12G17080 Oryza barthii OBART12G17080 I 0.688
Ca_10494 Cicer arietinum Ca_10494 I 0.688
Cla010474 Citrullus lanatus Cla010474 I 0.688
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.688
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.688
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.688
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.688
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.688
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.688
29635.m000461 Ricinus communis 29635.m000461 I 0.688
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.688
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.688
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.688
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.688
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.688
Pm015931 Prunus mume Pm015931 I 0.688
Si024417m.g Setaria italica Si024417m.g I 0.688
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.688
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.688
MDP0000276536 Malus domestica MDP0000276536 I 0.688
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.688
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.688
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.688
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.688
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.688
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.688
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.688
MDP0000551969 Malus domestica MDP0000551969 I 0.688
OS12G0582900 Oryza sativa OS12G0582900 I 0.688
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.688
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.688
PK28640.1 Cannabis sativa PK28640.1 I 0.688
F775_02727 Aegilops tauschii F775_02727 I 0.688
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.688
PK13330.1 Cannabis sativa PK13330.1 I 0.688
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.688
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.688
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.688
PK25269.1 Cannabis sativa PK25269.1 I 0.688
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.688
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.686
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.686
Si032213m.g Setaria italica Si032213m.g I 0.686
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.686
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.686
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.684
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.684
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.684
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.684
MDP0000177547 Malus domestica MDP0000177547 I 0.684
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.684
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.684
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.684
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.684
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.684
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.684
TCM_025913 Theobroma cacao TCM_025913 I 0.684
OBART07G06690 Oryza barthii OBART07G06690 I 0.684
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.684
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.684
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.684
Si033237m.g Setaria italica Si033237m.g I 0.684
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.684
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.684
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.684
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.684
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.684
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.684
TCM_040015 Theobroma cacao TCM_040015 I 0.684
OS07G0204000 Oryza sativa OS07G0204000 I 0.684
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.684
OB07G15030 Oryza brachyantha OB07G15030 I 0.684
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.684
Pm025326 Prunus mume Pm025326 I 0.684
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.684
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.684
Ca_08232 Cicer arietinum Ca_08232 I 0.684
Bra002262 Brassica rapa Bra002262 I 0.683
Bo3g013830 Brassica oleracea Bo3g013830 I 0.683
Bo2g018360 Brassica oleracea Bo2g018360 I 0.683
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.683
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.683
Bra006518 Brassica rapa Bra006518 I 0.683
Bra020063 Brassica rapa Bra020063 I 0.683
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.683
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.683
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.683
Bo9g152440 Brassica oleracea Bo9g152440 I 0.683
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.683
30084.m000185 Ricinus communis 30084.m000185 I 0.683
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.683
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.683
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.682
MDP0000138669 Malus domestica MDP0000138669 I 0.681
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.681
MDP0000133476 Malus domestica MDP0000133476 I 0.681
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.681
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.681
Pm008788 Prunus mume Pm008788 I 0.681
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.681
mgf022665m Mimulus guttatus mgf022665m I 0.681
mgf018851m Mimulus guttatus mgf018851m I 0.681
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.681
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.681
OB09G23520 Oryza brachyantha OB09G23520 I 0.681
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.681
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.681
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.681
TCM_005425 Theobroma cacao TCM_005425 I 0.681
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.681
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.680
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.680
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.680
Cla012318 Citrullus lanatus Cla012318 I 0.680
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.680
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.680
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.680
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.680
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.680
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.680
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.679
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.679
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.679
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.678
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.678
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.678
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.678
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.678
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.677
30174.m008961 Ricinus communis 30174.m008961 I 0.677