Lus10039171.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10039171.g T008918_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.748 0.902
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.748 0.902
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10039171 AP2 18 69

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

271 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.831
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.786
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.786
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.784
Ca_00417 Cicer arietinum Ca_00417 I 0.781
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.776
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.775
PK28640.1 Cannabis sativa PK28640.1 I 0.770
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.763
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.763
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.763
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.758
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.756
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.756
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.751
TCM_040015 Theobroma cacao TCM_040015 I 0.750
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.750
OS07G0204000 Oryza sativa OS07G0204000 I 0.750
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.750
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.750
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.750
OBART07G06690 Oryza barthii OBART07G06690 I 0.750
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.750
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.750
OB07G15030 Oryza brachyantha OB07G15030 I 0.750
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.750
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.750
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.748
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.748
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.748
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.748
MDP0000177547 Malus domestica MDP0000177547 I 0.748
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.748
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.748
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.748
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.748
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.748
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.748
30084.m000185 Ricinus communis 30084.m000185 I 0.748
Pm025326 Prunus mume Pm025326 I 0.748
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.748
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.748
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.748
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.748
Ca_08232 Cicer arietinum Ca_08232 I 0.748
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.748
TCM_025913 Theobroma cacao TCM_025913 I 0.748
Bra002262 Brassica rapa Bra002262 I 0.748
Bo9g152440 Brassica oleracea Bo9g152440 I 0.748
Bo3g013830 Brassica oleracea Bo3g013830 I 0.748
Bra006518 Brassica rapa Bra006518 I 0.748
Bra020063 Brassica rapa Bra020063 I 0.748
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.748
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.748
Bo2g018360 Brassica oleracea Bo2g018360 I 0.748
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.748
Si033237m.g Setaria italica Si033237m.g I 0.746
mgf022665m Mimulus guttatus mgf022665m I 0.746
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.746
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.746
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.746
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.745
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.745
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.745
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.745
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.744
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.744
MDP0000127123 Malus domestica MDP0000127123 N 0.742
mgf024137m Mimulus guttatus mgf024137m N 0.742
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.742
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.741
PK25269.1 Cannabis sativa PK25269.1 I 0.741
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.740
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.740
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.739
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.739
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.739
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.739
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.739
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.739
Cla010474 Citrullus lanatus Cla010474 I 0.739
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.739
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.739
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.739
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.739
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.739
Si024417m.g Setaria italica Si024417m.g I 0.739
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.739
Pm000004 Prunus mume Pm000004 I 0.738
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.738
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.738
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.738
MDP0000525933 Malus domestica MDP0000525933 I 0.738
30174.m009031 Ricinus communis 30174.m009031 I 0.738
TCM_011632 Theobroma cacao TCM_011632 I 0.738
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.737
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.737
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.737
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.737
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.737
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.736
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.736
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.736
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.736
TCM_018659 Theobroma cacao TCM_018659 I 0.736
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.736
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.736
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.736
OBART12G17080 Oryza barthii OBART12G17080 I 0.736
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.736
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.736
MDP0000551969 Malus domestica MDP0000551969 I 0.736
Ca_10494 Cicer arietinum Ca_10494 I 0.736
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.736
PK13330.1 Cannabis sativa PK13330.1 I 0.736
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.736
Pm015931 Prunus mume Pm015931 I 0.736
29635.m000461 Ricinus communis 29635.m000461 I 0.736
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.736
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.736
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.736
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.736
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.736
Si038848m.g Setaria italica Si038848m.g I 0.736
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.736
OS12G0582900 Oryza sativa OS12G0582900 I 0.736
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.736
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.736
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.736
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.736
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.736
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.736
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.736
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.736
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.736
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.736
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.736
F775_02727 Aegilops tauschii F775_02727 I 0.736
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.736
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.736
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.736
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.736
MDP0000276536 Malus domestica MDP0000276536 I 0.736
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.735
Cla012318 Citrullus lanatus Cla012318 I 0.735
MTR_4g112490 Medicago truncatula MTR_4g112490 N 0.735
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.735
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.735
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.735
29813.m001543 Ricinus communis 29813.m001543 I 0.735
MTR_4g111915 Medicago truncatula MTR_4g111915 N 0.735
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.734
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.734
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.734
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.734
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.734
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.734
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.734
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.734
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.733
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.733
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.733
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.733
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.732
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.732
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.732
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.732
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.731
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.731
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.731
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.730
MDP0000133476 Malus domestica MDP0000133476 I 0.730
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.730
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.730
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.730
Pm008788 Prunus mume Pm008788 I 0.730
MDP0000138669 Malus domestica MDP0000138669 I 0.730
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.730
mgf018851m Mimulus guttatus mgf018851m I 0.730
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.730
TCM_005425 Theobroma cacao TCM_005425 I 0.730
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.730
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.730
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.730
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.730
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.729
Si032213m.g Setaria italica Si032213m.g I 0.729
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.729
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.728
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.728
MDP0000316843 Malus domestica MDP0000316843 N 0.728
Ca_06590 Cicer arietinum Ca_06590 N 0.727
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.727
30174.m008961 Ricinus communis 30174.m008961 I 0.726
mgf023693m Mimulus guttatus mgf023693m I 0.725
mgf022810m Mimulus guttatus mgf022810m I 0.725
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.724
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.724
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.724
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.724
Si030686m.g Setaria italica Si030686m.g I 0.724
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.723
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.723
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.723
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.722
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.722
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.722
OBART07G19610 Oryza barthii OBART07G19610 I 0.722
OS07G0575000 Oryza sativa OS07G0575000 I 0.722
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.722
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.722
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.722
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.722
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.722
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.722
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.720
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.719
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.716
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.716
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.716
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.715
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.714
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.713
Ca_25424 Cicer arietinum Ca_25424 I 0.712
MDP0000197375 Malus domestica MDP0000197375 I 0.711
MDP0000157628 Malus domestica MDP0000157628 I 0.711
Pm030235 Prunus mume Pm030235 I 0.711
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.711
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.710
TCM_014471 Theobroma cacao TCM_014471 I 0.709
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.709
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.709
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.709
Ca_16397 Cicer arietinum Ca_16397 I 0.709
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.708
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.708
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.703
Cla021590 Citrullus lanatus Cla021590 I 0.703
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.703
OB09G23520 Oryza brachyantha OB09G23520 I 0.702
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.702
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.701
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.701
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.700
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.700
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.699
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.699
F775_04303 Aegilops tauschii F775_04303 I 0.698
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.695
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.694
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.693
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.692
TCM_015579 Theobroma cacao TCM_015579 I 0.692
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.692
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.692
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.688
30068.m002623 Ricinus communis 30068.m002623 I 0.686
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.685
Cla019296 Citrullus lanatus Cla019296 N 0.684
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.684
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.684
Cucsa.198700 Cucumis sativus Cucsa.198700 N 0.684
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.681
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.681
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.681
MDP0000128326 Malus domestica MDP0000128326 I 0.681
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.681
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.680
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.680
SELMODRAFT_72871 Selaginella moellendorffii SELMODRAFT_72871 N 0.679
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.677