Lus10036793.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10036793.g T008908_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.790 0.824
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.790 0.824
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10036793 AP2 76 127

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.824
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.820
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.820
29813.m001543 Ricinus communis 29813.m001543 I 0.820
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.820
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.818
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.818
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.818
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.818
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.818
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.818
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.818
TCM_018659 Theobroma cacao TCM_018659 I 0.818
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.818
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.818
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.818
Ca_10494 Cicer arietinum Ca_10494 I 0.818
Pm015931 Prunus mume Pm015931 I 0.818
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.818
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.818
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.818
OBART12G17080 Oryza barthii OBART12G17080 I 0.818
Si038848m.g Setaria italica Si038848m.g I 0.818
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.818
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.818
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.818
29635.m000461 Ricinus communis 29635.m000461 I 0.818
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.818
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.818
MDP0000276536 Malus domestica MDP0000276536 I 0.818
OS12G0582900 Oryza sativa OS12G0582900 I 0.818
MDP0000551969 Malus domestica MDP0000551969 I 0.818
F775_02727 Aegilops tauschii F775_02727 I 0.818
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.818
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.818
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.818
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.818
PK13330.1 Cannabis sativa PK13330.1 I 0.818
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.818
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.818
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.818
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.815
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.815
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.815
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.815
Cla010474 Citrullus lanatus Cla010474 I 0.815
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.815
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.815
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.815
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.815
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.815
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.815
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.815
Si024417m.g Setaria italica Si024417m.g I 0.815
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.814
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.814
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.812
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.810
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.810
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.809
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.809
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.804
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.803
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.802
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.801
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.800
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.798
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.794
Si033237m.g Setaria italica Si033237m.g I 0.794
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.794
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.793
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.792
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.792
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.790
MDP0000177547 Malus domestica MDP0000177547 I 0.790
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.790
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.790
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.790
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.790
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.790
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.790
30084.m000185 Ricinus communis 30084.m000185 I 0.790
Pm025326 Prunus mume Pm025326 I 0.790
Ca_08232 Cicer arietinum Ca_08232 I 0.790
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.790
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.790
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.790
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.790
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.790
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.790
TCM_025913 Theobroma cacao TCM_025913 I 0.790
TCM_040015 Theobroma cacao TCM_040015 I 0.790
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.790
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.790
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.790
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.790
OB07G15030 Oryza brachyantha OB07G15030 I 0.790
OBART07G06690 Oryza barthii OBART07G06690 I 0.790
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.790
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.790
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.790
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.790
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.790
OS07G0204000 Oryza sativa OS07G0204000 I 0.790
Bo3g013830 Brassica oleracea Bo3g013830 I 0.790
Bo2g018360 Brassica oleracea Bo2g018360 I 0.790
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.790
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.790
Bo9g152440 Brassica oleracea Bo9g152440 I 0.790
Bra002262 Brassica rapa Bra002262 I 0.790
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.790
Bra020063 Brassica rapa Bra020063 I 0.790
Bra006518 Brassica rapa Bra006518 I 0.790
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.789
mgf022665m Mimulus guttatus mgf022665m I 0.788
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.787
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.786
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.784
TCM_011632 Theobroma cacao TCM_011632 I 0.784
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.784
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.781
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.780
F775_04303 Aegilops tauschii F775_04303 I 0.779
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.777
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.777
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.777
Cla012318 Citrullus lanatus Cla012318 I 0.777
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.777
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.777
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.776
mgf023693m Mimulus guttatus mgf023693m I 0.769
mgf022810m Mimulus guttatus mgf022810m I 0.769
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.767
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.765
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.759
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.756
PK25269.1 Cannabis sativa PK25269.1 I 0.756
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.755
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.755
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.749
Cla021590 Citrullus lanatus Cla021590 I 0.749
30174.m008961 Ricinus communis 30174.m008961 I 0.746
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.746
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.745
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.745
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.745
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.744
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.743
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.743
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.742
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.742
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.742
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.742
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.742
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.742
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.742
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.742
TCM_005425 Theobroma cacao TCM_005425 I 0.742
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.742
mgf018851m Mimulus guttatus mgf018851m I 0.742
MDP0000133476 Malus domestica MDP0000133476 I 0.742
Pm008788 Prunus mume Pm008788 I 0.742
MDP0000138669 Malus domestica MDP0000138669 I 0.742
MDP0000128326 Malus domestica MDP0000128326 I 0.741
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.741
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.740
MDP0000525933 Malus domestica MDP0000525933 I 0.740
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.740
Si032213m.g Setaria italica Si032213m.g I 0.740
OB09G23520 Oryza brachyantha OB09G23520 I 0.740
Pm000004 Prunus mume Pm000004 I 0.740
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.739
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.739
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.739
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.734
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.734
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.734
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.733
30174.m009031 Ricinus communis 30174.m009031 I 0.733
Ca_25424 Cicer arietinum Ca_25424 I 0.732
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.731
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.731
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.731
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.729
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.729
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.728
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.727
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.727
MDP0000157628 Malus domestica MDP0000157628 I 0.726
Pm030235 Prunus mume Pm030235 I 0.726
MDP0000197375 Malus domestica MDP0000197375 I 0.726
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.726
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.726
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.726
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.725
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.725
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.723
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.722
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.722
Ca_16397 Cicer arietinum Ca_16397 I 0.722
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.722
TCM_014471 Theobroma cacao TCM_014471 I 0.722
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.722
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.720
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.718
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.718
Ca_00417 Cicer arietinum Ca_00417 I 0.717
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.709
PK28640.1 Cannabis sativa PK28640.1 I 0.709
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.709
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.709
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.709
TCM_015579 Theobroma cacao TCM_015579 I 0.709
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.708
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.706
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.701
Si027288m.g Setaria italica Si027288m.g I 0.699
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.699
30068.m002623 Ricinus communis 30068.m002623 I 0.698
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.697
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.697
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.695
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.695
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.694
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.694
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.694
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.693
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.692
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.692
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.691
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.691
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.688
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.688
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.688
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.688
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.688
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.687
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.686
e_gw1.195.59.1 Physcomitrella patens e_gw1.195.59.1 N 0.685
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.685
Si030686m.g Setaria italica Si030686m.g I 0.685
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.685
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.682
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.682
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.682
OBART07G19610 Oryza barthii OBART07G19610 I 0.682
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.682
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.682
OS07G0575000 Oryza sativa OS07G0575000 I 0.682
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.682
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.682
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.682
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.682
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.680
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.680
Cla005054 Citrullus lanatus Cla005054 N 0.678
MDP0000127123 Malus domestica MDP0000127123 N 0.678
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.678
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.678
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.678
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.677