cassava9887.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava9887.m1 T006982_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.726 0.941
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.726 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9887.m1 AP2 31 82

Links

Other AP2 family TFs
Other Manihot esculenta TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.785
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.785
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.740
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.738
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.736
OBART07G06690 Oryza barthii OBART07G06690 I 0.727
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.727
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.727
OB07G15030 Oryza brachyantha OB07G15030 I 0.727
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.727
OS07G0204000 Oryza sativa OS07G0204000 I 0.727
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.727
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.727
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.727
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.727
TCM_040015 Theobroma cacao TCM_040015 I 0.727
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.727
Pm025326 Prunus mume Pm025326 I 0.726
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.726
Bra002262 Brassica rapa Bra002262 I 0.726
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.726
Bra006518 Brassica rapa Bra006518 I 0.726
MDP0000177547 Malus domestica MDP0000177547 I 0.726
Bo9g152440 Brassica oleracea Bo9g152440 I 0.726
Ca_08232 Cicer arietinum Ca_08232 I 0.726
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.726
Bo2g018360 Brassica oleracea Bo2g018360 I 0.726
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.726
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.726
Bo3g013830 Brassica oleracea Bo3g013830 I 0.726
Bra020063 Brassica rapa Bra020063 I 0.726
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.726
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.726
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.726
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.726
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.726
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.726
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.726
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.726
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.726
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.726
TCM_025913 Theobroma cacao TCM_025913 I 0.726
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.726
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.726
30084.m000185 Ricinus communis 30084.m000185 I 0.726
Si033237m.g Setaria italica Si033237m.g I 0.724
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.724
mgf022665m Mimulus guttatus mgf022665m I 0.723
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.723
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.723
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.723
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.722
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.722
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.722
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.721
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.721
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.720
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.720
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.719
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.718
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.717
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.717
Si024417m.g Setaria italica Si024417m.g I 0.717
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.717
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.717
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.717
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.717
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.717
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.717
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.717
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.717
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.717
Cla010474 Citrullus lanatus Cla010474 I 0.717
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.717
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.716
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.714
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.714
MDP0000551969 Malus domestica MDP0000551969 I 0.714
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.714
MDP0000276536 Malus domestica MDP0000276536 I 0.714
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.714
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.714
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.714
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.714
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.714
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.714
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.714
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.714
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.714
OBART12G17080 Oryza barthii OBART12G17080 I 0.714
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.714
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.714
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.714
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.714
F775_02727 Aegilops tauschii F775_02727 I 0.714
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.714
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.714
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.714
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.714
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.714
PK13330.1 Cannabis sativa PK13330.1 I 0.714
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.714
29635.m000461 Ricinus communis 29635.m000461 I 0.714
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.714
TCM_018659 Theobroma cacao TCM_018659 I 0.714
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.714
Ca_10494 Cicer arietinum Ca_10494 I 0.714
Pm015931 Prunus mume Pm015931 I 0.714
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.714
Si038848m.g Setaria italica Si038848m.g I 0.714
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.714
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.714
OS12G0582900 Oryza sativa OS12G0582900 I 0.714
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.714
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.714
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.714
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.714
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.712
Cla012318 Citrullus lanatus Cla012318 I 0.712
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.712
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.712
29813.m001543 Ricinus communis 29813.m001543 I 0.712
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.712
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.712
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.712
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.712
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.710
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.708
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.708
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.704
mgf023693m Mimulus guttatus mgf023693m I 0.702
mgf022810m Mimulus guttatus mgf022810m I 0.702
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.700
MDP0000172804 Malus domestica MDP0000172804 I 0.699
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.696
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.693
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.692
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.690
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.686
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.686
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.683
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.679