cassava4189.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava4189.m1 T006932_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.794 0.824
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.794 0.824
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava4189.m1 AP2 15 66

Links

Other AP2 family TFs
Other Manihot esculenta TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.829
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.829
29813.m001543 Ricinus communis 29813.m001543 I 0.824
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.824
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.824
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.822
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.822
Ca_10494 Cicer arietinum Ca_10494 I 0.822
Pm015931 Prunus mume Pm015931 I 0.822
29635.m000461 Ricinus communis 29635.m000461 I 0.822
OS12G0582900 Oryza sativa OS12G0582900 I 0.822
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.822
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.822
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.822
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.822
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.822
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.822
PK13330.1 Cannabis sativa PK13330.1 I 0.822
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.822
Si038848m.g Setaria italica Si038848m.g I 0.822
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.822
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.822
TCM_018659 Theobroma cacao TCM_018659 I 0.822
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.822
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.822
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.822
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.822
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.822
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.822
MDP0000276536 Malus domestica MDP0000276536 I 0.822
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.822
MDP0000551969 Malus domestica MDP0000551969 I 0.822
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.822
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.822
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.822
OBART12G17080 Oryza barthii OBART12G17080 I 0.822
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.822
F775_02727 Aegilops tauschii F775_02727 I 0.822
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.822
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.822
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.822
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.820
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.820
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.819
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.819
Cla010474 Citrullus lanatus Cla010474 I 0.819
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.819
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.819
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.819
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.819
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.819
Si024417m.g Setaria italica Si024417m.g I 0.819
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.819
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.819
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.818
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.818
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.816
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.814
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.814
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.812
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.812
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.812
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.807
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.807
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.806
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.804
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.804
Si033237m.g Setaria italica Si033237m.g I 0.797
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.797
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.797
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.795
TCM_025913 Theobroma cacao TCM_025913 I 0.794
Bo9g152440 Brassica oleracea Bo9g152440 I 0.794
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.794
TCM_040015 Theobroma cacao TCM_040015 I 0.794
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.794
Bo3g013830 Brassica oleracea Bo3g013830 I 0.794
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.794
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.794
Ca_08232 Cicer arietinum Ca_08232 I 0.794
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.794
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.794
MDP0000177547 Malus domestica MDP0000177547 I 0.794
Bra020063 Brassica rapa Bra020063 I 0.794
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.794
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.794
Bra006518 Brassica rapa Bra006518 I 0.794
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.794
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.794
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.794
Bra002262 Brassica rapa Bra002262 I 0.794
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.794
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.794
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.794
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.794
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.794
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.794
Pm025326 Prunus mume Pm025326 I 0.794
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.794
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.794
30084.m000185 Ricinus communis 30084.m000185 I 0.794
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.794
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.794
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.794
Bo2g018360 Brassica oleracea Bo2g018360 I 0.794
OB07G15030 Oryza brachyantha OB07G15030 I 0.794
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.794
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.794
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.794
OBART07G06690 Oryza barthii OBART07G06690 I 0.794
OS07G0204000 Oryza sativa OS07G0204000 I 0.794
mgf022665m Mimulus guttatus mgf022665m I 0.792
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.792
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.791
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.790
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.790
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.789
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.788
TCM_011632 Theobroma cacao TCM_011632 I 0.788
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.788
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.785
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.783
F775_04303 Aegilops tauschii F775_04303 I 0.783
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.781
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.781
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.781
Cla012318 Citrullus lanatus Cla012318 I 0.781
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.781
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.781
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.780
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.771
mgf023693m Mimulus guttatus mgf023693m I 0.770
mgf022810m Mimulus guttatus mgf022810m I 0.770
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.768
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.763
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.760
PK25269.1 Cannabis sativa PK25269.1 I 0.760
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.759
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.759
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.749
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.749
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.749
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.747
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.747
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.747
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.747
Cla021590 Citrullus lanatus Cla021590 I 0.747
MDP0000525933 Malus domestica MDP0000525933 I 0.744
Pm000004 Prunus mume Pm000004 I 0.744
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.744
Si032213m.g Setaria italica Si032213m.g I 0.744
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.744
OB09G23520 Oryza brachyantha OB09G23520 I 0.744
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.743
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.743
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.741
MDP0000138669 Malus domestica MDP0000138669 I 0.741
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.741
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.741
mgf018851m Mimulus guttatus mgf018851m I 0.741
TCM_005425 Theobroma cacao TCM_005425 I 0.741
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.741
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.741
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.741
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.741
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.741
Pm008788 Prunus mume Pm008788 I 0.741
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.741
MDP0000133476 Malus domestica MDP0000133476 I 0.741
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.741
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.740
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.738
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.738
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.738
30174.m008961 Ricinus communis 30174.m008961 I 0.737
MDP0000128326 Malus domestica MDP0000128326 I 0.737
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.737
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.735
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.735
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.735
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.732
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.731
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.730
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.729
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.729
Ca_25424 Cicer arietinum Ca_25424 I 0.728
30174.m009031 Ricinus communis 30174.m009031 I 0.728
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.725
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.725
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.725
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.724
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.723
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.722
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.722
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.721
Pm030235 Prunus mume Pm030235 I 0.721
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.721
Ca_00417 Cicer arietinum Ca_00417 I 0.721
MDP0000197375 Malus domestica MDP0000197375 I 0.721
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.721
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.721
MDP0000157628 Malus domestica MDP0000157628 I 0.721
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.721
Ca_16397 Cicer arietinum Ca_16397 I 0.721
TCM_014471 Theobroma cacao TCM_014471 I 0.717
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.715
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.715
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.712
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.708
TCM_015579 Theobroma cacao TCM_015579 I 0.708
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.708
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.708
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.706
Si027288m.g Setaria italica Si027288m.g I 0.703
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.702
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.701
PK28640.1 Cannabis sativa PK28640.1 I 0.701
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.701
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.701
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.700
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.699
30068.m002623 Ricinus communis 30068.m002623 I 0.696
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.693
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.692
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.691
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.690
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.690
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.689
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.687
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.687
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.687
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.687
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.687
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.687
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.686
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.685
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.685
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.685
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.685
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.685
OBART07G19610 Oryza barthii OBART07G19610 I 0.685
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.685
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.685
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.685
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.685
OS07G0575000 Oryza sativa OS07G0575000 I 0.685
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.685
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.684
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.683
e_gw1.195.59.1 Physcomitrella patens e_gw1.195.59.1 N 0.681
Si030686m.g Setaria italica Si030686m.g I 0.681
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.681
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.681
MDP0000127123 Malus domestica MDP0000127123 N 0.677
Cla005054 Citrullus lanatus Cla005054 N 0.677
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.677