BRADI1G54450 (Brachypodium distachyon)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 BRADI1G54450 T001275_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.768 0.882
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.768 0.882
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI1G54450.1 AP2 26 78

Links

Other AP2 family TFs
Other Brachypodium distachyon TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.843
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.792
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.792
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.792
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.784
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.769
OB07G15030 Oryza brachyantha OB07G15030 I 0.768
TCM_040015 Theobroma cacao TCM_040015 I 0.768
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.768
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.768
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.768
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.768
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.768
OBART07G06690 Oryza barthii OBART07G06690 I 0.768
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.768
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.768
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.768
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.768
OS07G0204000 Oryza sativa OS07G0204000 I 0.768
30084.m000185 Ricinus communis 30084.m000185 I 0.768
Bo9g152440 Brassica oleracea Bo9g152440 I 0.768
Bra002262 Brassica rapa Bra002262 I 0.768
Bra006518 Brassica rapa Bra006518 I 0.768
Bo3g013830 Brassica oleracea Bo3g013830 I 0.768
Bo2g018360 Brassica oleracea Bo2g018360 I 0.768
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.768
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.768
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.768
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.768
Bra020063 Brassica rapa Bra020063 I 0.768
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.768
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.768
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.767
Ca_08232 Cicer arietinum Ca_08232 I 0.767
Pm025326 Prunus mume Pm025326 I 0.767
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.767
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.767
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.767
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.767
MDP0000177547 Malus domestica MDP0000177547 I 0.767
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.767
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.767
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.767
TCM_025913 Theobroma cacao TCM_025913 I 0.767
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.767
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.767
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.767
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.765
Si033237m.g Setaria italica Si033237m.g I 0.765
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.764
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.764
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.764
Cla012318 Citrullus lanatus Cla012318 I 0.764
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.764
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.764
mgf022665m Mimulus guttatus mgf022665m I 0.764
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.764
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.764
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.764
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.763
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.763
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.763
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.763
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.762
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.761
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.760
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.759
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.759
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.758
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.758
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.754
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.754
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.754
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.752
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.748
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.748
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.748
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.748
Si024417m.g Setaria italica Si024417m.g I 0.748
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.748
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.748
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.748
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.748
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.748
Cla010474 Citrullus lanatus Cla010474 I 0.748
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.748
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.748
29635.m000461 Ricinus communis 29635.m000461 I 0.745
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.745
MDP0000276536 Malus domestica MDP0000276536 I 0.745
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.745
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.745
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.745
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.745
MDP0000551969 Malus domestica MDP0000551969 I 0.745
Pm015931 Prunus mume Pm015931 I 0.745
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.745
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.745
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.745
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.745
OS12G0582900 Oryza sativa OS12G0582900 I 0.745
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.745
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.745
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.745
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.745
F775_02727 Aegilops tauschii F775_02727 I 0.745
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.745
Ca_10494 Cicer arietinum Ca_10494 I 0.745
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.745
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.745
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.745
TCM_018659 Theobroma cacao TCM_018659 I 0.745
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.745
PK13330.1 Cannabis sativa PK13330.1 I 0.745
Si038848m.g Setaria italica Si038848m.g I 0.745
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.745
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.745
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.745
OBART12G17080 Oryza barthii OBART12G17080 I 0.745
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.745
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.745
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.745
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.745
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.745
29813.m001543 Ricinus communis 29813.m001543 I 0.743
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.743
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.743
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.743
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.743
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.743
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.741
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.741
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.739
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.739
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.735
MDP0000525933 Malus domestica MDP0000525933 I 0.732
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.732
Pm000004 Prunus mume Pm000004 I 0.732
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.731
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.731
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.727
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.726
Ca_00417 Cicer arietinum Ca_00417 I 0.724
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.721
mgf022810m Mimulus guttatus mgf022810m I 0.721
mgf023693m Mimulus guttatus mgf023693m I 0.721
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.718
MDP0000128326 Malus domestica MDP0000128326 I 0.717
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.715
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.715
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.712
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.710
PK28640.1 Cannabis sativa PK28640.1 I 0.709
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.708
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.707
TCM_011632 Theobroma cacao TCM_011632 I 0.707
F775_04303 Aegilops tauschii F775_04303 I 0.706
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.703
MDP0000127123 Malus domestica MDP0000127123 N 0.702
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.701
mgf024137m Mimulus guttatus mgf024137m N 0.701
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.698
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.698
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.697
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.697
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.697
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.697
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.697
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.697
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.696
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.696
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.694
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.694
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.692
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.692
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.690
MDP0000316843 Malus domestica MDP0000316843 N 0.688
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.687
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.687
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.687
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.685
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.685
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.685
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.685
PK25269.1 Cannabis sativa PK25269.1 I 0.684
GLYMA20G03890 Glycine max GLYMA20G03890 N 0.683
Si032213m.g Setaria italica Si032213m.g I 0.682
30174.m009031 Ricinus communis 30174.m009031 I 0.682
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.682
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.681
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.681
OB09G23520 Oryza brachyantha OB09G23520 I 0.681
Cla021590 Citrullus lanatus Cla021590 I 0.680
Ca_06590 Cicer arietinum Ca_06590 N 0.680
PGSC0003DMG400008352 Solanum tuberosum PGSC0003DMG400008352 N 0.680
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.680
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.680
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.679
MTR_4g111915 Medicago truncatula MTR_4g111915 N 0.678
MTR_4g112490 Medicago truncatula MTR_4g112490 N 0.678
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.677
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.677
Si030686m.g Setaria italica Si030686m.g I 0.677
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.677