Lus10030430.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10030430.g T008874_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.782 0.824
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.782 0.824
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10030430 AP2 38 89

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.812
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.807
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.807
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.802
29813.m001543 Ricinus communis 29813.m001543 I 0.802
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.802
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.800
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.800
OBART12G17080 Oryza barthii OBART12G17080 I 0.800
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.800
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.800
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.800
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.800
29635.m000461 Ricinus communis 29635.m000461 I 0.800
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.800
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.800
TCM_018659 Theobroma cacao TCM_018659 I 0.800
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.800
Si038848m.g Setaria italica Si038848m.g I 0.800
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.800
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.800
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.800
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.800
OS12G0582900 Oryza sativa OS12G0582900 I 0.800
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.800
Pm015931 Prunus mume Pm015931 I 0.800
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.800
Ca_10494 Cicer arietinum Ca_10494 I 0.800
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.800
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.800
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.800
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.800
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.800
MDP0000551969 Malus domestica MDP0000551969 I 0.800
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.800
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.800
PK13330.1 Cannabis sativa PK13330.1 I 0.800
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.800
MDP0000276536 Malus domestica MDP0000276536 I 0.800
F775_02727 Aegilops tauschii F775_02727 I 0.800
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.800
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.800
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.798
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.798
Cla010474 Citrullus lanatus Cla010474 I 0.797
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.797
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.797
Si024417m.g Setaria italica Si024417m.g I 0.797
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.797
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.797
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.797
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.797
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.797
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.797
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.797
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.796
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.796
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.794
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.792
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.792
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.792
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.791
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.791
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.786
Si033237m.g Setaria italica Si033237m.g I 0.786
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.786
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.786
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.785
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.785
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.784
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.783
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.782
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.782
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.782
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.782
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.782
Ca_08232 Cicer arietinum Ca_08232 I 0.782
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.782
Pm025326 Prunus mume Pm025326 I 0.782
30084.m000185 Ricinus communis 30084.m000185 I 0.782
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.782
MDP0000177547 Malus domestica MDP0000177547 I 0.782
TCM_040015 Theobroma cacao TCM_040015 I 0.782
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.782
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.782
TCM_025913 Theobroma cacao TCM_025913 I 0.782
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.782
OBART07G06690 Oryza barthii OBART07G06690 I 0.782
OB07G15030 Oryza brachyantha OB07G15030 I 0.782
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.782
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.782
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.782
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.782
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.782
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.782
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.782
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.782
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.782
Bo2g018360 Brassica oleracea Bo2g018360 I 0.782
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.782
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.782
Bo3g013830 Brassica oleracea Bo3g013830 I 0.782
Bo9g152440 Brassica oleracea Bo9g152440 I 0.782
Bra020063 Brassica rapa Bra020063 I 0.782
Bra006518 Brassica rapa Bra006518 I 0.782
Bra002262 Brassica rapa Bra002262 I 0.782
OS07G0204000 Oryza sativa OS07G0204000 I 0.782
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.782
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.782
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.782
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.782
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.780
mgf022665m Mimulus guttatus mgf022665m I 0.780
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.779
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.779
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.778
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.777
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.776
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.771
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.770
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.770
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.769
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.769
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.769
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.769
Cla012318 Citrullus lanatus Cla012318 I 0.769
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.769
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.768
TCM_011632 Theobroma cacao TCM_011632 I 0.766
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.766
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.764
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.762
F775_04303 Aegilops tauschii F775_04303 I 0.761
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.756
mgf023693m Mimulus guttatus mgf023693m I 0.749
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.749
mgf022810m Mimulus guttatus mgf022810m I 0.749
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.742
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.741
PK25269.1 Cannabis sativa PK25269.1 I 0.738
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.736
Pm000004 Prunus mume Pm000004 I 0.732
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.732
MDP0000525933 Malus domestica MDP0000525933 I 0.732
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.731
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.731
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.727
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.727
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.727
Cla021590 Citrullus lanatus Cla021590 I 0.726
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.726
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.725
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.725
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.725
MDP0000128326 Malus domestica MDP0000128326 I 0.725
OB09G23520 Oryza brachyantha OB09G23520 I 0.723
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.722
Si032213m.g Setaria italica Si032213m.g I 0.722
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.719
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.719
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.719
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.719
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.719
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.719
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.719
mgf018851m Mimulus guttatus mgf018851m I 0.719
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.719
Pm008788 Prunus mume Pm008788 I 0.719
TCM_005425 Theobroma cacao TCM_005425 I 0.719
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.719
MDP0000138669 Malus domestica MDP0000138669 I 0.719
MDP0000133476 Malus domestica MDP0000133476 I 0.719
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.719
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.718
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.717
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.717
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.716
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.716
30174.m008961 Ricinus communis 30174.m008961 I 0.715
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.714
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.714
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.713
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.710
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.710
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.710
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.710
Ca_25424 Cicer arietinum Ca_25424 I 0.707
30174.m009031 Ricinus communis 30174.m009031 I 0.707
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.707
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.704
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.704
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.704
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.703
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.703
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.701
Ca_00417 Cicer arietinum Ca_00417 I 0.700
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.699
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.699
Pm030235 Prunus mume Pm030235 I 0.699
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.699
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.699
Ca_16397 Cicer arietinum Ca_16397 I 0.699
MDP0000157628 Malus domestica MDP0000157628 I 0.699
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.699
MDP0000197375 Malus domestica MDP0000197375 I 0.699
TCM_014471 Theobroma cacao TCM_014471 I 0.696
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.694
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.693
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.693
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.691
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.690
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.689
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.689
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.687
TCM_015579 Theobroma cacao TCM_015579 I 0.686
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.686
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.686
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.686
30068.m002623 Ricinus communis 30068.m002623 I 0.685
Si027288m.g Setaria italica Si027288m.g I 0.681
PK28640.1 Cannabis sativa PK28640.1 I 0.680
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.680
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.679
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.678