Lus10013614.g (Linum usitatissimum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Lus10013614.g T008790_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.773 0.922
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.773 0.922
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013614 AP2 38 89

Links

Other AP2 family TFs
Other Linum usitatissimum TFs

176 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.788
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.788
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.788
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.788
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.787
Cla012318 Citrullus lanatus Cla012318 I 0.787
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.786
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.774
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.774
OB07G15030 Oryza brachyantha OB07G15030 I 0.774
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.774
OS07G0204000 Oryza sativa OS07G0204000 I 0.774
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.774
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.774
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.774
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.774
OBART07G06690 Oryza barthii OBART07G06690 I 0.774
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.774
TCM_040015 Theobroma cacao TCM_040015 I 0.774
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.773
Bo2g018360 Brassica oleracea Bo2g018360 I 0.773
MDP0000177547 Malus domestica MDP0000177547 I 0.773
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.773
Ca_08232 Cicer arietinum Ca_08232 I 0.773
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.773
Bra020063 Brassica rapa Bra020063 I 0.773
Bra002262 Brassica rapa Bra002262 I 0.773
Bo9g152440 Brassica oleracea Bo9g152440 I 0.773
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.773
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.773
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.773
Bra006518 Brassica rapa Bra006518 I 0.773
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.773
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.773
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.773
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.773
30084.m000185 Ricinus communis 30084.m000185 I 0.773
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.773
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.773
Pm025326 Prunus mume Pm025326 I 0.773
Bo3g013830 Brassica oleracea Bo3g013830 I 0.773
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.773
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.773
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.773
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.773
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.773
TCM_025913 Theobroma cacao TCM_025913 I 0.773
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.771
mgf022665m Mimulus guttatus mgf022665m I 0.771
Si033237m.g Setaria italica Si033237m.g I 0.771
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.770
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.770
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.769
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.769
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.768
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.767
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.765
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.765
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.765
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.764
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.760
Pm000004 Prunus mume Pm000004 I 0.750
MDP0000525933 Malus domestica MDP0000525933 I 0.750
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.750
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.747
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.747
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.747
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.747
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.745
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.744
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.741
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.741
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.741
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.741
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.741
Si024417m.g Setaria italica Si024417m.g I 0.741
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.741
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.741
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.741
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.741
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.741
Cla010474 Citrullus lanatus Cla010474 I 0.741
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.741
Ca_10494 Cicer arietinum Ca_10494 I 0.738
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.738
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.738
MDP0000551969 Malus domestica MDP0000551969 I 0.738
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.738
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.738
PK13330.1 Cannabis sativa PK13330.1 I 0.738
MDP0000276536 Malus domestica MDP0000276536 I 0.738
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.738
29635.m000461 Ricinus communis 29635.m000461 I 0.738
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.738
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.738
Pm015931 Prunus mume Pm015931 I 0.738
Si038848m.g Setaria italica Si038848m.g I 0.738
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.738
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.738
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.738
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.738
OS12G0582900 Oryza sativa OS12G0582900 I 0.738
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.738
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.738
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.738
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.738
OBART12G17080 Oryza barthii OBART12G17080 I 0.738
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.738
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.738
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.738
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.738
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.738
F775_02727 Aegilops tauschii F775_02727 I 0.738
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.738
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.738
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.738
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.738
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.738
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.738
TCM_018659 Theobroma cacao TCM_018659 I 0.738
29813.m001543 Ricinus communis 29813.m001543 I 0.737
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.737
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.737
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.737
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.736
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.736
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.736
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.734
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.733
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.733
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.731
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.731
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.731
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.729
mgf023693m Mimulus guttatus mgf023693m I 0.727
mgf022810m Mimulus guttatus mgf022810m I 0.727
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.726
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.725
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.725
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.721
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.721
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.719
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.718
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.711
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.710
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.709
MDP0000128326 Malus domestica MDP0000128326 I 0.706
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.706
Si030686m.g Setaria italica Si030686m.g I 0.706
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.706
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.706
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.704
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.704
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.704
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.704
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.704
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.704
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.704
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.704
OS07G0575000 Oryza sativa OS07G0575000 I 0.704
OBART07G19610 Oryza barthii OBART07G19610 I 0.704
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.704
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.703
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.700
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.700
TCM_011632 Theobroma cacao TCM_011632 I 0.700
F775_04303 Aegilops tauschii F775_04303 I 0.699
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.698
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.693
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.691
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.691
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.683
PK25269.1 Cannabis sativa PK25269.1 I 0.678
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.678
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.677
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.677