cassava23953.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava23953.valid.m1 T006859_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.824 0.941
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.824 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava23953.valid.m1 AP2 35 86

Links

Other AP2 family TFs
Other Manihot esculenta TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.831
Pm025326 Prunus mume Pm025326 I 0.826
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.826
TCM_025913 Theobroma cacao TCM_025913 I 0.826
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.826
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.826
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.826
Ca_08232 Cicer arietinum Ca_08232 I 0.826
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.826
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.826
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.826
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.826
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.826
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.826
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.826
MDP0000177547 Malus domestica MDP0000177547 I 0.826
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.825
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.825
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.825
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.825
TCM_040015 Theobroma cacao TCM_040015 I 0.825
OS07G0204000 Oryza sativa OS07G0204000 I 0.825
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.825
OBART07G06690 Oryza barthii OBART07G06690 I 0.825
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.825
OB07G15030 Oryza brachyantha OB07G15030 I 0.825
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.825
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.825
Bra006518 Brassica rapa Bra006518 I 0.824
mgf022665m Mimulus guttatus mgf022665m I 0.824
Bra020063 Brassica rapa Bra020063 I 0.824
Bra002262 Brassica rapa Bra002262 I 0.824
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.824
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.824
30084.m000185 Ricinus communis 30084.m000185 I 0.824
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.824
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.824
Bo2g018360 Brassica oleracea Bo2g018360 I 0.824
Bo3g013830 Brassica oleracea Bo3g013830 I 0.824
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.824
Bo9g152440 Brassica oleracea Bo9g152440 I 0.824
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.824
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.823
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.823
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.822
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.821
Si033237m.g Setaria italica Si033237m.g I 0.821
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.821
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.819
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.817
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.816
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.815
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.813
Cla012318 Citrullus lanatus Cla012318 I 0.813
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.811
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.811
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.811
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.811
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.811
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.810
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.800
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.799
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.799
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.797
Cla010474 Citrullus lanatus Cla010474 I 0.793
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.793
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.793
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.793
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.793
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.793
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.793
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.793
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.793
Si024417m.g Setaria italica Si024417m.g I 0.793
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.793
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.793
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.793
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.789
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.789
Si038848m.g Setaria italica Si038848m.g I 0.789
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.789
MDP0000276536 Malus domestica MDP0000276536 I 0.789
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.789
MDP0000551969 Malus domestica MDP0000551969 I 0.789
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.789
PK13330.1 Cannabis sativa PK13330.1 I 0.789
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.789
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.789
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.789
Ca_10494 Cicer arietinum Ca_10494 I 0.789
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.789
Pm015931 Prunus mume Pm015931 I 0.789
29635.m000461 Ricinus communis 29635.m000461 I 0.789
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.789
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.789
TCM_018659 Theobroma cacao TCM_018659 I 0.789
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.789
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.789
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.789
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.789
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.789
OS12G0582900 Oryza sativa OS12G0582900 I 0.789
F775_02727 Aegilops tauschii F775_02727 I 0.789
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.789
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.789
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.789
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.789
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.789
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.789
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.789
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.789
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.789
OBART12G17080 Oryza barthii OBART12G17080 I 0.789
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.789
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.788
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.788
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.788
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.788
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.788
29813.m001543 Ricinus communis 29813.m001543 I 0.788
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.786
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.784
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.784
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.780
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.780
mgf022810m Mimulus guttatus mgf022810m I 0.778
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.778
mgf023693m Mimulus guttatus mgf023693m I 0.778
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.776
Pm000004 Prunus mume Pm000004 I 0.774
MDP0000525933 Malus domestica MDP0000525933 I 0.774
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.774
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.773
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.772
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.771
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.771
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.769
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.767
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.761
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.759
MDP0000128326 Malus domestica MDP0000128326 I 0.759
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.757
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.757
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.753
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.752
TCM_011632 Theobroma cacao TCM_011632 I 0.752
F775_04303 Aegilops tauschii F775_04303 I 0.751
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.751
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.742
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.740
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.740
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.739
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.735
30174.m009031 Ricinus communis 30174.m009031 I 0.733
PK25269.1 Cannabis sativa PK25269.1 I 0.731
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.731
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.731
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.727
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.727
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.727
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.726
Cla021590 Citrullus lanatus Cla021590 I 0.724
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.724
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.722
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.722
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.722
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.721
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.721
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.720
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.720
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.719
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.719
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.718
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.718
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.718
Pm008788 Prunus mume Pm008788 I 0.718
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.718
TCM_005425 Theobroma cacao TCM_005425 I 0.718
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.718
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.718
MDP0000138669 Malus domestica MDP0000138669 I 0.718
MDP0000133476 Malus domestica MDP0000133476 I 0.718
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.718
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.718
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.718
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.718
mgf018851m Mimulus guttatus mgf018851m I 0.718
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.717
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.717
Si032213m.g Setaria italica Si032213m.g I 0.717
OB09G23520 Oryza brachyantha OB09G23520 I 0.716
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.715
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.715
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.715
30174.m008961 Ricinus communis 30174.m008961 I 0.714
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.712
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.712
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.712
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.712
Si030686m.g Setaria italica Si030686m.g I 0.712
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.711
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.711
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.711
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.709
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.709
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.709
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.709
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.709
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.709
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.709
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.709
OBART07G19610 Oryza barthii OBART07G19610 I 0.709
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.709
OS07G0575000 Oryza sativa OS07G0575000 I 0.709
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.709
Pm030235 Prunus mume Pm030235 I 0.705
MDP0000197375 Malus domestica MDP0000197375 I 0.705
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.705
MDP0000157628 Malus domestica MDP0000157628 I 0.705
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.704
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.704
TCM_014471 Theobroma cacao TCM_014471 I 0.703
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.702
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.702
Ca_25424 Cicer arietinum Ca_25424 I 0.700
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.698
Ca_00417 Cicer arietinum Ca_00417 I 0.698
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.697
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.697
Ca_16397 Cicer arietinum Ca_16397 I 0.697
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.697
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.696
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.694
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.694
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.692
PK28640.1 Cannabis sativa PK28640.1 I 0.689
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.688
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.684
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.683
TCM_015579 Theobroma cacao TCM_015579 I 0.683
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.683
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.683
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.680
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.680
MDP0000172804 Malus domestica MDP0000172804 I 0.678
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.677
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.677
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.677