PGSC0003DMG400024606 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400024606 T004460_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.693 0.745
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.693 0.745
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400063264 AP2 30 81

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.780
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.780
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.779
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.770
TCM_014471 Theobroma cacao TCM_014471 I 0.767
30174.m009031 Ricinus communis 30174.m009031 I 0.763
Pm030235 Prunus mume Pm030235 I 0.759
MDP0000197375 Malus domestica MDP0000197375 I 0.756
MDP0000157628 Malus domestica MDP0000157628 I 0.756
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.753
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.752
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.752
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.744
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.737
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.736
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.734
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.732
MTR_4g111915 Medicago truncatula MTR_4g111915 N 0.716
MTR_4g112490 Medicago truncatula MTR_4g112490 N 0.716
Gorai.001G064900 Gossypium raimondii Gorai.001G064900 N 0.710
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.708
Ca_06590 Cicer arietinum Ca_06590 N 0.708
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.707
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.707
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.707
PK25269.1 Cannabis sativa PK25269.1 I 0.707
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.706
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.706
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.705
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.705
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.703
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.702
PK28640.1 Cannabis sativa PK28640.1 I 0.702
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.700
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.699
mgf018851m Mimulus guttatus mgf018851m I 0.699
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.699
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.699
30174.m008961 Ricinus communis 30174.m008961 I 0.699
Pm008788 Prunus mume Pm008788 I 0.699
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.699
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.699
TCM_005425 Theobroma cacao TCM_005425 I 0.699
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.699
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.699
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.699
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.699
MDP0000133476 Malus domestica MDP0000133476 I 0.699
MDP0000138669 Malus domestica MDP0000138669 I 0.699
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.699
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.698
TCM_011632 Theobroma cacao TCM_011632 I 0.698
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.698
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.698
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.698
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.697
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.697
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.697
MDP0000551969 Malus domestica MDP0000551969 I 0.697
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.697
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.697
TCM_018659 Theobroma cacao TCM_018659 I 0.697
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.697
PK13330.1 Cannabis sativa PK13330.1 I 0.697
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.697
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.697
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.697
Ca_10494 Cicer arietinum Ca_10494 I 0.697
F775_02727 Aegilops tauschii F775_02727 I 0.697
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.697
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.697
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.697
Si038848m.g Setaria italica Si038848m.g I 0.697
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.697
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.697
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.697
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.697
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.697
Pm015931 Prunus mume Pm015931 I 0.697
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.697
29635.m000461 Ricinus communis 29635.m000461 I 0.697
MDP0000276536 Malus domestica MDP0000276536 I 0.697
Cla010474 Citrullus lanatus Cla010474 I 0.697
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.697
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.697
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.697
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.697
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.697
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.697
OS12G0582900 Oryza sativa OS12G0582900 I 0.697
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.697
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.697
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.697
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.697
OBART12G17080 Oryza barthii OBART12G17080 I 0.697
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.697
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.697
Si024417m.g Setaria italica Si024417m.g I 0.697
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.697
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.697
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.697
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.697
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.697
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.697
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.697
mgf022665m Mimulus guttatus mgf022665m I 0.696
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.696
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.696
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.695
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.695
29813.m001543 Ricinus communis 29813.m001543 I 0.695
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.695
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.695
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.695
OBART07G06690 Oryza barthii OBART07G06690 I 0.694
TCM_025913 Theobroma cacao TCM_025913 I 0.694
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.694
TCM_040015 Theobroma cacao TCM_040015 I 0.694
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.694
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.694
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.694
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.694
OB07G15030 Oryza brachyantha OB07G15030 I 0.694
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.694
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.694
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.694
Si033237m.g Setaria italica Si033237m.g I 0.694
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.694
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.694
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.694
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.694
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.694
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.694
MDP0000177547 Malus domestica MDP0000177547 I 0.694
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.694
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.694
Ca_08232 Cicer arietinum Ca_08232 I 0.694
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.694
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.694
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.694
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.694
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.694
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.694
Pm025326 Prunus mume Pm025326 I 0.694
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.694
OS07G0204000 Oryza sativa OS07G0204000 I 0.694
Bo2g018360 Brassica oleracea Bo2g018360 I 0.693
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.693
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.693
Bo9g152440 Brassica oleracea Bo9g152440 I 0.693
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.693
Bo3g013830 Brassica oleracea Bo3g013830 I 0.693
30084.m000185 Ricinus communis 30084.m000185 I 0.693
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.693
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.693
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.693
Bra020063 Brassica rapa Bra020063 I 0.693
mgf023693m Mimulus guttatus mgf023693m I 0.693
mgf022810m Mimulus guttatus mgf022810m I 0.693
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.693
Bra006518 Brassica rapa Bra006518 I 0.693
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.693
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.693
Si032213m.g Setaria italica Si032213m.g I 0.693
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.693
Bra002262 Brassica rapa Bra002262 I 0.693
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.693
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.692
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.692
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.692
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.692
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.692
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.692
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.692
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.690
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.687
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.687
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.686
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.684
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.684
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.684
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.684
Ca_16397 Cicer arietinum Ca_16397 I 0.684
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.683
Pm000004 Prunus mume Pm000004 I 0.683
MDP0000525933 Malus domestica MDP0000525933 I 0.683
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.683
Cucsa.198700 Cucumis sativus Cucsa.198700 N 0.680
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.680
Cla019296 Citrullus lanatus Cla019296 N 0.680
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.680
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.680
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.680
Ca_25424 Cicer arietinum Ca_25424 I 0.680
Cla012318 Citrullus lanatus Cla012318 I 0.680
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.680
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.679
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.679
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.678
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.678
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.678
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.678
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.678
Ca_00417 Cicer arietinum Ca_00417 I 0.677