Pavir.Ba01277 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ba01277 T009358_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.723 0.765
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.723 0.765
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba01277.1.p AP2 25 76

Links

Other AP2 family TFs
Other Panicum virgatum TFs

250 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si032213m.g Setaria italica Si032213m.g I 0.821
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.815
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.815
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.812
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.812
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.812
mgf018851m Mimulus guttatus mgf018851m I 0.812
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.812
TCM_005425 Theobroma cacao TCM_005425 I 0.812
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.812
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.812
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.812
Pm008788 Prunus mume Pm008788 I 0.812
MDP0000133476 Malus domestica MDP0000133476 I 0.812
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.812
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.812
MDP0000138669 Malus domestica MDP0000138669 I 0.812
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.811
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.811
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.811
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.809
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.809
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.809
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.809
30174.m008961 Ricinus communis 30174.m008961 I 0.808
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.796
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.796
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.795
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.790
Cla021590 Citrullus lanatus Cla021590 I 0.786
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.786
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.784
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.784
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.784
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.780
Ca_16397 Cicer arietinum Ca_16397 I 0.780
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.780
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.780
PK25269.1 Cannabis sativa PK25269.1 I 0.779
OB09G23520 Oryza brachyantha OB09G23520 I 0.777
Si027288m.g Setaria italica Si027288m.g I 0.764
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.756
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.748
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.748
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.748
TCM_015579 Theobroma cacao TCM_015579 I 0.748
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.747
TCM_011632 Theobroma cacao TCM_011632 I 0.747
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.746
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.746
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.746
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.746
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.746
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.746
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.746
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.746
Cla010474 Citrullus lanatus Cla010474 I 0.746
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.746
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.746
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.746
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.746
30068.m002623 Ricinus communis 30068.m002623 I 0.746
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.746
Si024417m.g Setaria italica Si024417m.g I 0.746
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.746
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.745
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.745
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.745
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.745
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.745
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.745
PK13330.1 Cannabis sativa PK13330.1 I 0.745
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.745
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.745
Ca_10494 Cicer arietinum Ca_10494 I 0.745
F775_02727 Aegilops tauschii F775_02727 I 0.745
Pm015931 Prunus mume Pm015931 I 0.745
29635.m000461 Ricinus communis 29635.m000461 I 0.745
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.745
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.745
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.745
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.745
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.745
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.745
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.745
TCM_018659 Theobroma cacao TCM_018659 I 0.745
Si038848m.g Setaria italica Si038848m.g I 0.745
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.745
MDP0000551969 Malus domestica MDP0000551969 I 0.745
MDP0000276536 Malus domestica MDP0000276536 I 0.745
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.745
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.745
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.745
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.745
OS12G0582900 Oryza sativa OS12G0582900 I 0.745
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.745
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.745
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.745
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.745
OBART12G17080 Oryza barthii OBART12G17080 I 0.745
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.745
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.745
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.745
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.744
29813.m001543 Ricinus communis 29813.m001543 I 0.744
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.744
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.744
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.744
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.742
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.740
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.740
Ca_00417 Cicer arietinum Ca_00417 I 0.737
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.736
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.736
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.736
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.736
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.736
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.736
Ca_25424 Cicer arietinum Ca_25424 I 0.734
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.734
30174.m009031 Ricinus communis 30174.m009031 I 0.733
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.733
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.729
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.728
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.727
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.726
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.725
Pm030235 Prunus mume Pm030235 I 0.724
MDP0000157628 Malus domestica MDP0000157628 I 0.724
MDP0000197375 Malus domestica MDP0000197375 I 0.724
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.724
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.723
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.723
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.723
Bo2g018360 Brassica oleracea Bo2g018360 I 0.723
Bo3g013830 Brassica oleracea Bo3g013830 I 0.723
Bra006518 Brassica rapa Bra006518 I 0.723
Bra002262 Brassica rapa Bra002262 I 0.723
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.723
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.723
MDP0000177547 Malus domestica MDP0000177547 I 0.723
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.723
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.723
Bo9g152440 Brassica oleracea Bo9g152440 I 0.723
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.723
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.723
Bra020063 Brassica rapa Bra020063 I 0.723
Pm025326 Prunus mume Pm025326 I 0.723
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.723
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.723
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.723
POPTR_0002s15480 Populus trichocarpa POPTR_0002s15480 N 0.723
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.723
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.723
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.723
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.723
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.723
TCM_014471 Theobroma cacao TCM_014471 I 0.723
TCM_025913 Theobroma cacao TCM_025913 I 0.723
TCM_040015 Theobroma cacao TCM_040015 I 0.723
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.723
Ca_08232 Cicer arietinum Ca_08232 I 0.723
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.723
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.723
OBART07G06690 Oryza barthii OBART07G06690 I 0.723
OB07G15030 Oryza brachyantha OB07G15030 I 0.723
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.723
30084.m000185 Ricinus communis 30084.m000185 I 0.723
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.723
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.723
OS07G0204000 Oryza sativa OS07G0204000 I 0.723
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.723
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.723
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.723
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.722
MDP0000127123 Malus domestica MDP0000127123 N 0.722
Si033237m.g Setaria italica Si033237m.g I 0.722
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.722
Cla005054 Citrullus lanatus Cla005054 N 0.721
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.721
mgf022665m Mimulus guttatus mgf022665m I 0.721
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.721
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.721
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.719
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.718
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.718
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.718
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.717
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.716
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.715
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.715
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.715
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.715
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.713
Pm000004 Prunus mume Pm000004 I 0.712
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.712
MDP0000525933 Malus domestica MDP0000525933 I 0.712
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.712
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.712
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.711
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.710
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.710
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.710
Cla012318 Citrullus lanatus Cla012318 I 0.710
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.710
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.710
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.709
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.709
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.709
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.709
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.709
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.707
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.707
F775_04303 Aegilops tauschii F775_04303 I 0.707
MDP0000316843 Malus domestica MDP0000316843 N 0.706
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.704
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.704
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.702
PK28640.1 Cannabis sativa PK28640.1 I 0.701
mgf022810m Mimulus guttatus mgf022810m I 0.699
mgf023693m Mimulus guttatus mgf023693m I 0.699
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.697
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.694
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.693
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.693
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.693
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.693
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.693
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.693
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.691
mgf024137m Mimulus guttatus mgf024137m N 0.691
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.691
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.691
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.689
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.688
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.686
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.686
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.686
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.682
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.681
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.680
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.680
Si030686m.g Setaria italica Si030686m.g I 0.679
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.679
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.679
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.679
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.678
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.678
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.678
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.678