cassava9303.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava9303.m1 T006980_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.726 0.725
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.726 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava9303.m1 AP2 51 102

Links

Other AP2 family TFs
Other Manihot esculenta TFs

264 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m009031 Ricinus communis 30174.m009031 I 0.804
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.803
TCM_014471 Theobroma cacao TCM_014471 I 0.793
Pm030235 Prunus mume Pm030235 I 0.783
MDP0000157628 Malus domestica MDP0000157628 I 0.783
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.783
MDP0000197375 Malus domestica MDP0000197375 I 0.783
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.774
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.773
PK28640.1 Cannabis sativa PK28640.1 I 0.761
PK25269.1 Cannabis sativa PK25269.1 I 0.759
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.758
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.758
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.758
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.754
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.753
mgf018851m Mimulus guttatus mgf018851m I 0.752
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.752
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.752
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.752
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.752
Pm008788 Prunus mume Pm008788 I 0.752
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.752
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.752
MDP0000138669 Malus domestica MDP0000138669 I 0.752
MDP0000133476 Malus domestica MDP0000133476 I 0.752
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.752
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.752
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.752
30174.m008961 Ricinus communis 30174.m008961 I 0.752
TCM_005425 Theobroma cacao TCM_005425 I 0.752
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.751
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.751
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.751
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.751
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.750
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.750
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.749
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.749
TCM_011632 Theobroma cacao TCM_011632 I 0.749
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.749
29635.m000461 Ricinus communis 29635.m000461 I 0.747
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.747
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.747
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.747
MDP0000551969 Malus domestica MDP0000551969 I 0.747
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.747
Pm015931 Prunus mume Pm015931 I 0.747
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.747
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.747
TCM_018659 Theobroma cacao TCM_018659 I 0.747
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.747
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.747
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.747
Si038848m.g Setaria italica Si038848m.g I 0.747
Si024417m.g Setaria italica Si024417m.g I 0.747
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.747
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.747
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.747
OS12G0582900 Oryza sativa OS12G0582900 I 0.747
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.747
Ca_10494 Cicer arietinum Ca_10494 I 0.747
MDP0000276536 Malus domestica MDP0000276536 I 0.747
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.747
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.747
Cla010474 Citrullus lanatus Cla010474 I 0.747
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.747
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.747
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.747
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.747
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.747
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.747
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.747
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.747
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.747
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.747
F775_02727 Aegilops tauschii F775_02727 I 0.747
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.747
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.747
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.747
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.747
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.747
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.747
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.747
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.747
PK13330.1 Cannabis sativa PK13330.1 I 0.747
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.747
OBART12G17080 Oryza barthii OBART12G17080 I 0.747
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.747
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.746
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.746
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.746
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.746
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.746
Si032213m.g Setaria italica Si032213m.g I 0.746
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.746
29813.m001543 Ricinus communis 29813.m001543 I 0.746
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.746
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.743
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.742
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.742
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.742
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.742
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.741
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.741
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.741
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.740
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.740
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.740
LjSGA_026378.1 Lotus japonicus LjSGA_026378.1 N 0.739
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.739
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.738
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.738
Ca_16397 Cicer arietinum Ca_16397 I 0.737
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.737
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.737
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.737
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.737
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.736
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.736
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.735
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.735
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.734
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.732
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.731
Ca_25424 Cicer arietinum Ca_25424 I 0.731
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.731
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.730
mgf022665m Mimulus guttatus mgf022665m I 0.729
Ca_00417 Cicer arietinum Ca_00417 I 0.729
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.728
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.728
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.727
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.727
TCM_025913 Theobroma cacao TCM_025913 I 0.727
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.727
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.727
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.727
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.727
Pm025326 Prunus mume Pm025326 I 0.727
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.727
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.727
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.727
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.727
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.727
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.727
MDP0000177547 Malus domestica MDP0000177547 I 0.727
Ca_08232 Cicer arietinum Ca_08232 I 0.727
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.727
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.727
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.727
OBART07G06690 Oryza barthii OBART07G06690 I 0.726
OB07G15030 Oryza brachyantha OB07G15030 I 0.726
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.726
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.726
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.726
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.726
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.726
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.726
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.726
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.726
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.726
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.726
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.726
Cla021590 Citrullus lanatus Cla021590 I 0.726
Bo3g013830 Brassica oleracea Bo3g013830 I 0.726
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.726
Bo9g152440 Brassica oleracea Bo9g152440 I 0.726
Bra006518 Brassica rapa Bra006518 I 0.726
OS07G0204000 Oryza sativa OS07G0204000 I 0.726
TCM_040015 Theobroma cacao TCM_040015 I 0.726
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.726
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.726
Si033237m.g Setaria italica Si033237m.g I 0.726
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.726
Bo2g018360 Brassica oleracea Bo2g018360 I 0.726
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.726
30084.m000185 Ricinus communis 30084.m000185 I 0.726
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.726
Bra020063 Brassica rapa Bra020063 I 0.726
Bra002262 Brassica rapa Bra002262 I 0.726
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.725
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.725
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.725
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.723
MTR_4g112490 Medicago truncatula MTR_4g112490 N 0.721
MTR_4g111915 Medicago truncatula MTR_4g111915 N 0.721
OB09G23520 Oryza brachyantha OB09G23520 I 0.719
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.719
MDP0000525933 Malus domestica MDP0000525933 I 0.715
Pm000004 Prunus mume Pm000004 I 0.715
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.715
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.715
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.714
Ca_06590 Cicer arietinum Ca_06590 N 0.714
F775_04303 Aegilops tauschii F775_04303 I 0.714
Cla012318 Citrullus lanatus Cla012318 I 0.713
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.713
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.713
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.713
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.713
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.713
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.712
TCM_015579 Theobroma cacao TCM_015579 I 0.712
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.712
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.712
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.712
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.709
mgf022810m Mimulus guttatus mgf022810m I 0.708
mgf023693m Mimulus guttatus mgf023693m I 0.708
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.707
30068.m002623 Ricinus communis 30068.m002623 I 0.706
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.701
Gorai.001G064900 Gossypium raimondii Gorai.001G064900 N 0.701
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.700
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.698
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.697
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.697
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.692
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.691
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.691
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.690
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.690
Si027288m.g Setaria italica Si027288m.g I 0.689
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.687
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.687
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.687
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.687
Si030686m.g Setaria italica Si030686m.g I 0.687
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.686
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.686
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.686
Cla005054 Citrullus lanatus Cla005054 N 0.684
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.684
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.684
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.683
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.683
Cucsa.198700 Cucumis sativus Cucsa.198700 N 0.682
Cla019296 Citrullus lanatus Cla019296 N 0.682
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.681
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.681
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.680
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.680
OBART07G19610 Oryza barthii OBART07G19610 I 0.680
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.680
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.680
OS07G0575000 Oryza sativa OS07G0575000 I 0.680
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.680
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.680
MDP0000127123 Malus domestica MDP0000127123 N 0.680
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.680
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.680
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.680
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.680
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.679
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.679
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.679
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.679
MDP0000316843 Malus domestica MDP0000316843 N 0.679
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.678
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.678
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.678
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.678
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.678