Pavir.Bb00676 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Bb00676 T009376_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.822 0.922
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.822 0.922
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb00676.1.p AP2 41 92

Links

Other AP2 family TFs
Other Panicum virgatum TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.828
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.827
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.826
Si033237m.g Setaria italica Si033237m.g I 0.826
MDP0000177547 Malus domestica MDP0000177547 I 0.822
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.822
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.822
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.822
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.822
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.822
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.822
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.822
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.822
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.822
OB07G15030 Oryza brachyantha OB07G15030 I 0.822
OBART07G06690 Oryza barthii OBART07G06690 I 0.822
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.822
Pm025326 Prunus mume Pm025326 I 0.822
OS07G0204000 Oryza sativa OS07G0204000 I 0.822
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.822
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.822
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.822
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.822
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.822
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.822
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.822
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.822
TCM_025913 Theobroma cacao TCM_025913 I 0.822
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.822
Ca_08232 Cicer arietinum Ca_08232 I 0.822
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.822
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.822
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.822
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.822
Bra020063 Brassica rapa Bra020063 I 0.822
Bra006518 Brassica rapa Bra006518 I 0.822
Bo2g018360 Brassica oleracea Bo2g018360 I 0.822
Bo3g013830 Brassica oleracea Bo3g013830 I 0.822
Bo9g152440 Brassica oleracea Bo9g152440 I 0.822
Bra002262 Brassica rapa Bra002262 I 0.822
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.822
30084.m000185 Ricinus communis 30084.m000185 I 0.822
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.822
TCM_040015 Theobroma cacao TCM_040015 I 0.822
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.822
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.820
mgf022665m Mimulus guttatus mgf022665m I 0.820
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.819
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.816
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.814
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.813
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.813
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.812
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.809
Cla012318 Citrullus lanatus Cla012318 I 0.809
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.809
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.809
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.809
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.809
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.808
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.803
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.803
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.797
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.796
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.793
OS12G0582900 Oryza sativa OS12G0582900 I 0.793
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.793
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.793
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.793
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.793
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.793
Si038848m.g Setaria italica Si038848m.g I 0.793
TCM_018659 Theobroma cacao TCM_018659 I 0.793
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.793
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.793
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.793
29635.m000461 Ricinus communis 29635.m000461 I 0.793
Ca_10494 Cicer arietinum Ca_10494 I 0.793
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.793
Pm015931 Prunus mume Pm015931 I 0.793
MDP0000551969 Malus domestica MDP0000551969 I 0.793
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.793
MDP0000276536 Malus domestica MDP0000276536 I 0.793
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.793
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.793
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.793
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.793
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.793
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.793
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.793
F775_02727 Aegilops tauschii F775_02727 I 0.793
OBART12G17080 Oryza barthii OBART12G17080 I 0.793
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.793
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.793
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.793
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.793
PK13330.1 Cannabis sativa PK13330.1 I 0.793
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.793
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.793
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.793
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.792
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.792
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.792
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.792
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.792
29813.m001543 Ricinus communis 29813.m001543 I 0.792
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.790
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.790
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.790
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.790
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.790
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.790
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.790
Si024417m.g Setaria italica Si024417m.g I 0.790
Cla010474 Citrullus lanatus Cla010474 I 0.790
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.790
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.790
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.790
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.790
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.789
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.789
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.785
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.785
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.784
mgf022810m Mimulus guttatus mgf022810m I 0.780
mgf023693m Mimulus guttatus mgf023693m I 0.780
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.780
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.778
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.776
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.776
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.772
MDP0000525933 Malus domestica MDP0000525933 I 0.772
Pm000004 Prunus mume Pm000004 I 0.772
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.771
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.771
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.771
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.767
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.765
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.759
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.757
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.757
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.755
MDP0000128326 Malus domestica MDP0000128326 I 0.755
TCM_011632 Theobroma cacao TCM_011632 I 0.755
F775_04303 Aegilops tauschii F775_04303 I 0.755
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.755
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.740
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.740
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.740
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.738
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.738
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.737
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.736
PK25269.1 Cannabis sativa PK25269.1 I 0.733
30174.m009031 Ricinus communis 30174.m009031 I 0.732
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.731
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.729
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.727
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.727
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.725
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.725
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.725
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.725
Cla021590 Citrullus lanatus Cla021590 I 0.724
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.724
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.721
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.721
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.721
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.720
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.719
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.719
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.718
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.717
30174.m008961 Ricinus communis 30174.m008961 I 0.717
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.717
Pm008788 Prunus mume Pm008788 I 0.717
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.717
MDP0000138669 Malus domestica MDP0000138669 I 0.717
MDP0000133476 Malus domestica MDP0000133476 I 0.717
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.717
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.717
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.717
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.717
mgf018851m Mimulus guttatus mgf018851m I 0.717
OB09G23520 Oryza brachyantha OB09G23520 I 0.717
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.717
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.717
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.717
TCM_005425 Theobroma cacao TCM_005425 I 0.717
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.716
Si032213m.g Setaria italica Si032213m.g I 0.716
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.716
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.716
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.716
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.715
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.715
OBART07G19610 Oryza barthii OBART07G19610 I 0.713
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.713
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.713
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.713
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.713
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.713
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.713
OS07G0575000 Oryza sativa OS07G0575000 I 0.713
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.713
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.713
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.713
Si030686m.g Setaria italica Si030686m.g I 0.713
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.713
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.713
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.712
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.710
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.710
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.708
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.708
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.708
Pm030235 Prunus mume Pm030235 I 0.705
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.705
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.705
MDP0000157628 Malus domestica MDP0000157628 I 0.705
MDP0000197375 Malus domestica MDP0000197375 I 0.705
Ca_25424 Cicer arietinum Ca_25424 I 0.703
TCM_014471 Theobroma cacao TCM_014471 I 0.703
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.701
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.700
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.698
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.697
Ca_16397 Cicer arietinum Ca_16397 I 0.697
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.697
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.697
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.696
Ca_00417 Cicer arietinum Ca_00417 I 0.695
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.693
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.693
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.690
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.688
PK28640.1 Cannabis sativa PK28640.1 I 0.686
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.684
TCM_015579 Theobroma cacao TCM_015579 I 0.684
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.684
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.684
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.678
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.678
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.677
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.677
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.677