Cla012318 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla012318 T006461_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.817 0.941
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.817 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla012318 AP2 35 86

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

244 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.833
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.831
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.831
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.831
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.831
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.829
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.820
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.820
TCM_025913 Theobroma cacao TCM_025913 I 0.820
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.820
MDP0000177547 Malus domestica MDP0000177547 I 0.820
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.820
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.820
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.820
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.820
Pm025326 Prunus mume Pm025326 I 0.820
Ca_08232 Cicer arietinum Ca_08232 I 0.820
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.820
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.820
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.820
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.820
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.818
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.818
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.818
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.818
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.818
OB07G15030 Oryza brachyantha OB07G15030 I 0.818
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.818
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.818
OBART07G06690 Oryza barthii OBART07G06690 I 0.818
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.818
OS07G0204000 Oryza sativa OS07G0204000 I 0.818
TCM_040015 Theobroma cacao TCM_040015 I 0.818
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.817
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.817
Bo2g018360 Brassica oleracea Bo2g018360 I 0.817
mgf022665m Mimulus guttatus mgf022665m I 0.817
Bra006518 Brassica rapa Bra006518 I 0.817
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.817
Bra020063 Brassica rapa Bra020063 I 0.817
Bra002262 Brassica rapa Bra002262 I 0.817
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.817
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.817
Bo3g013830 Brassica oleracea Bo3g013830 I 0.817
Bo9g152440 Brassica oleracea Bo9g152440 I 0.817
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.817
30084.m000185 Ricinus communis 30084.m000185 I 0.817
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.816
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.816
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.815
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.815
Si033237m.g Setaria italica Si033237m.g I 0.815
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.814
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.813
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.813
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.811
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.810
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.809
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.808
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.804
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.794
MDP0000525933 Malus domestica MDP0000525933 I 0.793
Pm000004 Prunus mume Pm000004 I 0.793
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.793
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.792
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.792
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.790
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.787
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.786
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.786
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.786
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.786
Si024417m.g Setaria italica Si024417m.g I 0.786
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.786
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.786
Cla010474 Citrullus lanatus Cla010474 I 0.786
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.786
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.786
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.786
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.786
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.786
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.783
Ca_10494 Cicer arietinum Ca_10494 I 0.783
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.783
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.783
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.783
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.783
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.783
PK13330.1 Cannabis sativa PK13330.1 I 0.783
Si038848m.g Setaria italica Si038848m.g I 0.783
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.783
MDP0000276536 Malus domestica MDP0000276536 I 0.783
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.783
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.783
29635.m000461 Ricinus communis 29635.m000461 I 0.783
Pm015931 Prunus mume Pm015931 I 0.783
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.783
MDP0000551969 Malus domestica MDP0000551969 I 0.783
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.783
TCM_018659 Theobroma cacao TCM_018659 I 0.783
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.783
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.783
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.783
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.783
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.783
OS12G0582900 Oryza sativa OS12G0582900 I 0.783
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.783
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.783
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.783
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.783
F775_02727 Aegilops tauschii F775_02727 I 0.783
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.783
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.783
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.783
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.783
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.783
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.783
OBART12G17080 Oryza barthii OBART12G17080 I 0.783
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.783
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.781
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.781
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.781
29813.m001543 Ricinus communis 29813.m001543 I 0.781
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.781
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.781
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.779
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.777
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.777
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.776
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.773
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.771
mgf023693m Mimulus guttatus mgf023693m I 0.771
mgf022810m Mimulus guttatus mgf022810m I 0.771
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.769
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.765
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.764
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.764
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.764
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.763
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.760
MDP0000128326 Malus domestica MDP0000128326 I 0.753
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.752
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.746
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.745
TCM_011632 Theobroma cacao TCM_011632 I 0.745
F775_04303 Aegilops tauschii F775_04303 I 0.744
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.744
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.743
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.738
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.737
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.737
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.735
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.733
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.728
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.724
PK25269.1 Cannabis sativa PK25269.1 I 0.722
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.721
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.721
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.720
30174.m009031 Ricinus communis 30174.m009031 I 0.719
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.718
Cla021590 Citrullus lanatus Cla021590 I 0.717
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.717
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.716
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.715
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.715
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.715
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.714
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.714
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.713
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.713
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.713
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.712
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.712
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.712
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.711
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.711
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.711
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.711
TCM_005425 Theobroma cacao TCM_005425 I 0.711
mgf018851m Mimulus guttatus mgf018851m I 0.711
Pm008788 Prunus mume Pm008788 I 0.711
MDP0000133476 Malus domestica MDP0000133476 I 0.711
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.711
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.711
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.711
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.711
MDP0000138669 Malus domestica MDP0000138669 I 0.711
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.711
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.711
Si032213m.g Setaria italica Si032213m.g I 0.710
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.710
OB09G23520 Oryza brachyantha OB09G23520 I 0.709
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.708
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.708
30174.m008961 Ricinus communis 30174.m008961 I 0.707
Ca_25424 Cicer arietinum Ca_25424 I 0.706
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.705
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.705
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.705
Si030686m.g Setaria italica Si030686m.g I 0.705
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.704
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.704
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.704
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.704
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.703
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.702
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.702
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.702
OBART07G19610 Oryza barthii OBART07G19610 I 0.702
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.702
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.702
OS07G0575000 Oryza sativa OS07G0575000 I 0.702
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.702
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.702
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.702
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.702
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.702
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.701
MDP0000172804 Malus domestica MDP0000172804 I 0.698
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.697
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.697
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.695
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.694
MDP0000197375 Malus domestica MDP0000197375 I 0.692
MDP0000157628 Malus domestica MDP0000157628 I 0.692
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.692
Pm030235 Prunus mume Pm030235 I 0.692
Ca_16397 Cicer arietinum Ca_16397 I 0.690
TCM_014471 Theobroma cacao TCM_014471 I 0.690
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.690
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.690
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.690
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.689
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.687
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.687
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.687
TCM_015579 Theobroma cacao TCM_015579 I 0.687
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.685
Ca_00417 Cicer arietinum Ca_00417 I 0.685
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.684
30068.m002623 Ricinus communis 30068.m002623 I 0.681
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.680
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.680