Pavir.Ba03636 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ba03636 T009371_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.827 0.941
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.827 0.941
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba03636.1.p AP2 43 94

Links

Other AP2 family TFs
Other Panicum virgatum TFs

251 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si033237m.g Setaria italica Si033237m.g I 0.831
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.831
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.828
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.827
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.827
OB07G15030 Oryza brachyantha OB07G15030 I 0.827
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.827
OBART07G06690 Oryza barthii OBART07G06690 I 0.827
Ca_08232 Cicer arietinum Ca_08232 I 0.827
Pm025326 Prunus mume Pm025326 I 0.827
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.827
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.827
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.827
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.827
30084.m000185 Ricinus communis 30084.m000185 I 0.827
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.827
TCM_025913 Theobroma cacao TCM_025913 I 0.827
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.827
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.827
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.827
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.827
OS07G0204000 Oryza sativa OS07G0204000 I 0.827
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.827
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.827
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.827
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.827
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.827
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.827
TCM_040015 Theobroma cacao TCM_040015 I 0.827
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.827
Bra006518 Brassica rapa Bra006518 I 0.827
Bra020063 Brassica rapa Bra020063 I 0.827
MDP0000177547 Malus domestica MDP0000177547 I 0.827
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.827
Bra002262 Brassica rapa Bra002262 I 0.827
Bo9g152440 Brassica oleracea Bo9g152440 I 0.827
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.827
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.827
Bo2g018360 Brassica oleracea Bo2g018360 I 0.827
Bo3g013830 Brassica oleracea Bo3g013830 I 0.827
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.827
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.827
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.827
mgf022665m Mimulus guttatus mgf022665m I 0.825
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.825
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.824
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.824
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.822
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.821
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.819
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.818
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.818
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.817
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.814
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.814
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.814
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.814
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.814
Cla012318 Citrullus lanatus Cla012318 I 0.814
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.813
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.808
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.808
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.802
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.802
MDP0000551969 Malus domestica MDP0000551969 I 0.798
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.798
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.798
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.798
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.798
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.798
TCM_018659 Theobroma cacao TCM_018659 I 0.798
Pm015931 Prunus mume Pm015931 I 0.798
Ca_10494 Cicer arietinum Ca_10494 I 0.798
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.798
29635.m000461 Ricinus communis 29635.m000461 I 0.798
OS12G0582900 Oryza sativa OS12G0582900 I 0.798
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.798
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.798
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.798
PK13330.1 Cannabis sativa PK13330.1 I 0.798
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.798
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.798
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.798
MDP0000276536 Malus domestica MDP0000276536 I 0.798
Si038848m.g Setaria italica Si038848m.g I 0.798
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.798
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.798
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.798
OBART12G17080 Oryza barthii OBART12G17080 I 0.798
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.798
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.798
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.798
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.798
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.798
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.798
F775_02727 Aegilops tauschii F775_02727 I 0.798
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.798
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.798
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.798
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.798
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.797
29813.m001543 Ricinus communis 29813.m001543 I 0.797
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.797
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.797
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.795
Si024417m.g Setaria italica Si024417m.g I 0.795
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.795
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.795
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.795
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.795
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.795
Cla010474 Citrullus lanatus Cla010474 I 0.795
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.795
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.795
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.795
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.795
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.795
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.794
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.794
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.793
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.793
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.790
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.790
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.789
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.785
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.783
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.781
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.781
mgf023693m Mimulus guttatus mgf023693m I 0.780
mgf022810m Mimulus guttatus mgf022810m I 0.780
MDP0000525933 Malus domestica MDP0000525933 I 0.777
Pm000004 Prunus mume Pm000004 I 0.777
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.777
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.776
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.776
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.776
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.772
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.770
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.764
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.762
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.762
TCM_011632 Theobroma cacao TCM_011632 I 0.761
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.761
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.760
MDP0000128326 Malus domestica MDP0000128326 I 0.760
F775_04303 Aegilops tauschii F775_04303 I 0.760
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.745
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.745
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.745
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.743
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.743
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.742
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.742
PK25269.1 Cannabis sativa PK25269.1 I 0.738
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.736
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.734
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.732
30174.m009031 Ricinus communis 30174.m009031 I 0.732
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.730
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.730
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.729
Cla021590 Citrullus lanatus Cla021590 I 0.729
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.726
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.726
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.726
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.726
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.725
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.725
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.725
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.725
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.725
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.723
OB09G23520 Oryza brachyantha OB09G23520 I 0.722
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.722
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.722
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.722
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.722
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.722
MDP0000138669 Malus domestica MDP0000138669 I 0.722
MDP0000133476 Malus domestica MDP0000133476 I 0.722
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.722
TCM_005425 Theobroma cacao TCM_005425 I 0.722
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.722
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.722
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.722
mgf018851m Mimulus guttatus mgf018851m I 0.722
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.722
Pm008788 Prunus mume Pm008788 I 0.722
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.721
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.721
Si032213m.g Setaria italica Si032213m.g I 0.721
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.719
OBART07G19610 Oryza barthii OBART07G19610 I 0.719
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.719
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.719
OS07G0575000 Oryza sativa OS07G0575000 I 0.719
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.719
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.719
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.719
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.719
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.719
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.719
30174.m008961 Ricinus communis 30174.m008961 I 0.718
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.718
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.717
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.717
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.715
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.715
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.715
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.715
Si030686m.g Setaria italica Si030686m.g I 0.715
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.715
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.714
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.713
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.713
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.713
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.710
Ca_25424 Cicer arietinum Ca_25424 I 0.708
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.706
MDP0000197375 Malus domestica MDP0000197375 I 0.705
Pm030235 Prunus mume Pm030235 I 0.705
MDP0000157628 Malus domestica MDP0000157628 I 0.705
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.705
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.703
TCM_014471 Theobroma cacao TCM_014471 I 0.703
Ca_16397 Cicer arietinum Ca_16397 I 0.702
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.702
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.702
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.702
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.701
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.701
Ca_00417 Cicer arietinum Ca_00417 I 0.700
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.695
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.693
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.693
TCM_015579 Theobroma cacao TCM_015579 I 0.689
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.689
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.689
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.689
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.688
PK28640.1 Cannabis sativa PK28640.1 I 0.686
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.683
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.683
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.682
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.681
Si027288m.g Setaria italica Si027288m.g I 0.681
MDP0000172804 Malus domestica MDP0000172804 I 0.681
30068.m002623 Ricinus communis 30068.m002623 I 0.678
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.677
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.677
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.677