cassava4942.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava4942.m1 T006965_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.792 0.843
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.792 0.843
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava4942.m1 AP2 41 92

Links

Other AP2 family TFs
Other Manihot esculenta TFs

266 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.819
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.819
OS12G0582900 Oryza sativa OS12G0582900 I 0.819
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.819
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.819
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.819
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.819
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.819
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.819
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.819
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.819
OBART12G17080 Oryza barthii OBART12G17080 I 0.819
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.819
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.819
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.819
Si038848m.g Setaria italica Si038848m.g I 0.819
MDP0000276536 Malus domestica MDP0000276536 I 0.819
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.819
MDP0000551969 Malus domestica MDP0000551969 I 0.819
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.819
PK13330.1 Cannabis sativa PK13330.1 I 0.819
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.819
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.819
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.819
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.819
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.819
Ca_10494 Cicer arietinum Ca_10494 I 0.819
Pm015931 Prunus mume Pm015931 I 0.819
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.819
29635.m000461 Ricinus communis 29635.m000461 I 0.819
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.819
TCM_018659 Theobroma cacao TCM_018659 I 0.819
F775_02727 Aegilops tauschii F775_02727 I 0.819
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.819
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.819
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.819
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.818
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.818
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.818
29813.m001543 Ricinus communis 29813.m001543 I 0.818
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.816
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.816
Cla010474 Citrullus lanatus Cla010474 I 0.816
Si024417m.g Setaria italica Si024417m.g I 0.816
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.816
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.816
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.816
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.816
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.816
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.816
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.816
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.816
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.816
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.815
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.814
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.814
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.811
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.811
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.810
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.810
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.810
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.805
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.805
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.804
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.802
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.801
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.796
Si033237m.g Setaria italica Si033237m.g I 0.795
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.795
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.794
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.792
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.792
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.792
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.792
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.792
Bo2g018360 Brassica oleracea Bo2g018360 I 0.792
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.792
Bra002262 Brassica rapa Bra002262 I 0.792
Bra006518 Brassica rapa Bra006518 I 0.792
TCM_040015 Theobroma cacao TCM_040015 I 0.792
TCM_025913 Theobroma cacao TCM_025913 I 0.792
Bra020063 Brassica rapa Bra020063 I 0.792
Ca_08232 Cicer arietinum Ca_08232 I 0.792
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.792
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.792
Pm025326 Prunus mume Pm025326 I 0.792
Bo3g013830 Brassica oleracea Bo3g013830 I 0.792
Bo9g152440 Brassica oleracea Bo9g152440 I 0.792
30084.m000185 Ricinus communis 30084.m000185 I 0.792
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.792
OBART07G06690 Oryza barthii OBART07G06690 I 0.792
OB07G15030 Oryza brachyantha OB07G15030 I 0.792
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.792
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.792
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.792
MDP0000177547 Malus domestica MDP0000177547 I 0.792
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.792
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.792
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.792
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.792
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.792
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.792
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.792
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.792
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.792
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.792
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.792
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.792
OS07G0204000 Oryza sativa OS07G0204000 I 0.792
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.792
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.789
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.789
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.789
mgf022665m Mimulus guttatus mgf022665m I 0.789
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.788
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.787
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.786
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.784
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.783
TCM_011632 Theobroma cacao TCM_011632 I 0.782
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.782
F775_04303 Aegilops tauschii F775_04303 I 0.781
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.781
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.779
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.779
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.779
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.779
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.779
Cla012318 Citrullus lanatus Cla012318 I 0.779
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.778
mgf022810m Mimulus guttatus mgf022810m I 0.768
mgf023693m Mimulus guttatus mgf023693m I 0.768
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.766
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.765
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.761
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.758
PK25269.1 Cannabis sativa PK25269.1 I 0.758
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.756
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.756
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.747
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.747
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.747
Cla021590 Citrullus lanatus Cla021590 I 0.746
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.746
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.745
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.745
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.745
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.743
MDP0000128326 Malus domestica MDP0000128326 I 0.742
OB09G23520 Oryza brachyantha OB09G23520 I 0.742
Si032213m.g Setaria italica Si032213m.g I 0.742
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.742
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.741
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.741
Pm000004 Prunus mume Pm000004 I 0.741
MDP0000525933 Malus domestica MDP0000525933 I 0.741
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.741
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.741
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.740
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.740
mgf018851m Mimulus guttatus mgf018851m I 0.740
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.740
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.740
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.740
MDP0000138669 Malus domestica MDP0000138669 I 0.740
TCM_005425 Theobroma cacao TCM_005425 I 0.740
MDP0000133476 Malus domestica MDP0000133476 I 0.740
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.740
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.740
Pm008788 Prunus mume Pm008788 I 0.740
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.740
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.740
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.739
30174.m008961 Ricinus communis 30174.m008961 I 0.736
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.735
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.735
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.734
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.733
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.733
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.732
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.732
30174.m009031 Ricinus communis 30174.m009031 I 0.731
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.730
Ca_25424 Cicer arietinum Ca_25424 I 0.730
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.729
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.728
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.727
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.724
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.724
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.724
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.724
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.724
MDP0000157628 Malus domestica MDP0000157628 I 0.723
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.723
Pm030235 Prunus mume Pm030235 I 0.723
MDP0000197375 Malus domestica MDP0000197375 I 0.723
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.723
TCM_014471 Theobroma cacao TCM_014471 I 0.720
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.720
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.720
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.720
Ca_16397 Cicer arietinum Ca_16397 I 0.720
Ca_00417 Cicer arietinum Ca_00417 I 0.719
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.717
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.716
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.716
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.714
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.711
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.711
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.711
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.711
TCM_015579 Theobroma cacao TCM_015579 I 0.711
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.710
PK28640.1 Cannabis sativa PK28640.1 I 0.706
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.704
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.703
Si027288m.g Setaria italica Si027288m.g I 0.701
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.700
30068.m002623 Ricinus communis 30068.m002623 I 0.699
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.697
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.695
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.695
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.695
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.693
Solyc03g114440.1 Solanum lycopersicum Solyc03g114440.1 N 0.692
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.691
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.690
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.690
orange1.1g042608m.g Citrus sinensis orange1.1g042608m.g N 0.690
Ciclev10022187m.g Citrus clementina Ciclev10022187m.g N 0.690
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.689
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.689
Ciclev10024614m.g Citrus clementina Ciclev10024614m.g N 0.688
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.685
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.685
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.684
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.683
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.683
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.683
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.683
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.683
OBART07G19610 Oryza barthii OBART07G19610 I 0.683
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.683
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.683
OS07G0575000 Oryza sativa OS07G0575000 I 0.683
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.683
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.683
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.682
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.681
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.680
Cla005054 Citrullus lanatus Cla005054 N 0.680
MDP0000127123 Malus domestica MDP0000127123 N 0.680
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.679
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.679
Si030686m.g Setaria italica Si030686m.g I 0.679
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.679
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.679
e_gw1.195.59.1 Physcomitrella patens e_gw1.195.59.1 N 0.679
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.679
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.677
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.677
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.677
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.677
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.677
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.677
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.677