TCM_015579 (Theobroma cacao)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 TCM_015579 T005600_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.686 0.755
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.686 0.755
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY23795 AP2 22 73

Links

Other AP2 family TFs
Other Theobroma cacao TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.780
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.780
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.780
30068.m002623 Ricinus communis 30068.m002623 I 0.768
PK25269.1 Cannabis sativa PK25269.1 I 0.764
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.762
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.751
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.750
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.750
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.749
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.749
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.749
TCM_005425 Theobroma cacao TCM_005425 I 0.749
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.749
Cla005054 Citrullus lanatus Cla005054 N 0.749
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.749
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.749
mgf018851m Mimulus guttatus mgf018851m I 0.749
Pm008788 Prunus mume Pm008788 I 0.749
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.749
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.749
MDP0000138669 Malus domestica MDP0000138669 I 0.749
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.749
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.749
MDP0000133476 Malus domestica MDP0000133476 I 0.749
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.748
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.748
Si032213m.g Setaria italica Si032213m.g I 0.748
Ca_16397 Cicer arietinum Ca_16397 I 0.746
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.746
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.746
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.746
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.746
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.746
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.746
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.746
30174.m008961 Ricinus communis 30174.m008961 I 0.745
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.742
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.742
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.740
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.740
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.738
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.738
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.738
Ca_25424 Cicer arietinum Ca_25424 I 0.737
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.736
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.736
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.736
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.736
MDP0000127123 Malus domestica MDP0000127123 N 0.734
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.733
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.733
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.733
MDP0000316843 Malus domestica MDP0000316843 N 0.731
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.731
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.731
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.726
Cla021590 Citrullus lanatus Cla021590 I 0.723
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.723
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.723
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.723
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.722
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.722
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.722
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.720
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.720
Ca_00417 Cicer arietinum Ca_00417 I 0.717
TCM_011632 Theobroma cacao TCM_011632 I 0.716
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.716
MDP0000276536 Malus domestica MDP0000276536 I 0.714
PK13330.1 Cannabis sativa PK13330.1 I 0.714
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.714
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.714
Si038848m.g Setaria italica Si038848m.g I 0.714
MDP0000551969 Malus domestica MDP0000551969 I 0.714
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.714
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.714
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.714
Pm015931 Prunus mume Pm015931 I 0.714
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.714
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.714
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.714
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.714
29635.m000461 Ricinus communis 29635.m000461 I 0.714
TCM_018659 Theobroma cacao TCM_018659 I 0.714
Ca_10494 Cicer arietinum Ca_10494 I 0.714
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.714
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.714
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.714
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.714
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.714
OBART12G17080 Oryza barthii OBART12G17080 I 0.714
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.714
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.714
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.714
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.714
OS12G0582900 Oryza sativa OS12G0582900 I 0.714
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.714
F775_02727 Aegilops tauschii F775_02727 I 0.714
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.714
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.714
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.714
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.714
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.714
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.714
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.713
29813.m001543 Ricinus communis 29813.m001543 I 0.713
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.713
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.712
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.712
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.711
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.711
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.711
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.711
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.711
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.711
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.711
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.711
Si024417m.g Setaria italica Si024417m.g I 0.711
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.711
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.711
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.711
Cla010474 Citrullus lanatus Cla010474 I 0.711
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.711
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.710
OB09G23520 Oryza brachyantha OB09G23520 I 0.710
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.709
mgf024137m Mimulus guttatus mgf024137m N 0.709
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.709
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.708
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.706
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.706
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.705
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.705
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.705
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.700
30174.m009031 Ricinus communis 30174.m009031 I 0.700
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.700
SELMODRAFT_411255 Selaginella moellendorffii SELMODRAFT_411255 N 0.699
SELMODRAFT_409196 Selaginella moellendorffii SELMODRAFT_409196 N 0.699
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.698
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.697
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.697
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.694
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.694
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.692
Si027288m.g Setaria italica Si027288m.g I 0.691
Si033237m.g Setaria italica Si033237m.g I 0.690
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.690
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.690
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.690
TCM_014471 Theobroma cacao TCM_014471 I 0.689
gene26182-v1.0-hybrid Fragaria vesca gene26182-v1.0-hybrid N 0.689
MDP0000525933 Malus domestica MDP0000525933 I 0.689
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.689
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.689
Pm000004 Prunus mume Pm000004 I 0.689
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.687
MDP0000177547 Malus domestica MDP0000177547 I 0.687
TCM_025913 Theobroma cacao TCM_025913 I 0.687
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.687
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.687
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.687
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.687
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.687
Ca_08232 Cicer arietinum Ca_08232 I 0.687
Cla012318 Citrullus lanatus Cla012318 I 0.687
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.687
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.687
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.687
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.687
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.687
Pm025326 Prunus mume Pm025326 I 0.687
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.687
Bo3g013830 Brassica oleracea Bo3g013830 I 0.686
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.686
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.686
Bo2g018360 Brassica oleracea Bo2g018360 I 0.686
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.686
MDP0000197375 Malus domestica MDP0000197375 I 0.686
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.686
Bra020063 Brassica rapa Bra020063 I 0.686
MDP0000157628 Malus domestica MDP0000157628 I 0.686
Bra006518 Brassica rapa Bra006518 I 0.686
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.686
Bra002262 Brassica rapa Bra002262 I 0.686
Bo9g152440 Brassica oleracea Bo9g152440 I 0.686
OBART07G06690 Oryza barthii OBART07G06690 I 0.686
OS07G0204000 Oryza sativa OS07G0204000 I 0.686
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.686
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.686
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.686
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.686
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.686
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.686
Pm030235 Prunus mume Pm030235 I 0.686
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.686
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.686
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.686
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.686
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.686
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.686
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.686
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.686
30084.m000185 Ricinus communis 30084.m000185 I 0.686
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.686
TCM_040015 Theobroma cacao TCM_040015 I 0.686
OB07G15030 Oryza brachyantha OB07G15030 I 0.686
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.686
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.685
mgf022665m Mimulus guttatus mgf022665m I 0.685
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.684
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.684
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.683
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.683
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.683
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.681
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.681
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.681
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.679
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.678