CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene01438-v1.0-hybrid
(
Fragaria vesca
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
gene01438-v1.0-hybrid
T017144_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna01438.1-v1.0-hybrid
ARID/BRIGHT
58
143
SSDLFWHKLKEFHASLGTKFMIPTVGGKTLDLHLLFVEVTSRGGIEKVIRDRQWKEVIVAFNFPSTITSASFVLRKYYLSLLYDFE
mrna01438.1-v1.0-hybrid
Sox
253
320
PKSNRSGYNFFFAEHYASLKPLYYGQERAISKQIGYLWNNLTEDEKQVYQEKGLQDKERYKTEMMEYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Fragaria vesca
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MDP0000257366
Malus domestica
MDP0000257366
I
0.876
PRUPE_ppa008470mg
Prunus persica
PRUPE_ppa008470mg
N
0.869
Pm000293
Prunus mume
Pm000293
N
0.869
28657.m000391
Ricinus communis
28657.m000391
N
0.837
Ciclev10008919m.g
Citrus clementina
Ciclev10008919m.g
N
0.817
orange1.1g020460m.g
Citrus sinensis
orange1.1g020460m.g
N
0.817
POPTR_0011s17180
Populus trichocarpa
POPTR_0011s17180
N
0.817
MDP0000167232
Malus domestica
MDP0000167232
N
0.809
TCM_030511
Theobroma cacao
TCM_030511
I
0.804
cassava30583.valid.m1
Manihot esculenta
cassava30583.valid.m1
N
0.803
PK06884.1
Cannabis sativa
PK06884.1
N
0.797
Gorai.013G147900
Gossypium raimondii
Gorai.013G147900
N
0.784
VIT_19s0015g01770
Vitis vinifera
VIT_19s0015g01770
N
0.778
evm.TU.supercontig_12.68
Carica papaya
evm.TU.supercontig_12.68
I
0.778
SapurV1A.0338s0260
Salix purpurea
SapurV1A.0338s0260
I
0.771
AMTR_s00061p00067260
Amborella trichopoda
AMTR_s00061p00067260
N
0.719
Solyc12g016190.1
Solanum lycopersicum
Solyc12g016190.1
N
0.712
GLYMA06G48010
Glycine max
GLYMA06G48010
N
0.711
Aquca_093_00004
Aquilegia coerulea
Aquca_093_00004
N
0.708
GLYMA04G12530
Glycine max
GLYMA04G12530
N
0.706