CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10008919m.g
(
Citrus clementina
)
ARID/BRIGHT,Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01388 (ARID)
PF00505 (HMG_box)
IPR001606
IPR000910
Ciclev10008919m.g
T017136_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10008919m
ARID/BRIGHT
45
130
SSDLFWATLEAFHKSFGDKFKVPTVGGKALDLHRLFVEVTSRGGLGKVIRDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFE
Ciclev10008919m
Sox
247
314
PKSNRSGYNFFFAEHYARLKPHYYGQEKAISKKIGVLWSNLTEAEKQVYQEKGLKDKERYKSEMLEYR
Links
Other
ARID/BRIGHT,Sox
family TFs
Other
Citrus clementina
TFs
22 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g020460m.g
Citrus sinensis
orange1.1g020460m.g
N
1.000
TCM_030511
Theobroma cacao
TCM_030511
I
0.863
Pm000293
Prunus mume
Pm000293
N
0.850
PRUPE_ppa008470mg
Prunus persica
PRUPE_ppa008470mg
N
0.850
MDP0000257366
Malus domestica
MDP0000257366
I
0.843
28657.m000391
Ricinus communis
28657.m000391
N
0.843
Gorai.013G147900
Gossypium raimondii
Gorai.013G147900
N
0.830
PK06884.1
Cannabis sativa
PK06884.1
N
0.824
cassava30583.valid.m1
Manihot esculenta
cassava30583.valid.m1
N
0.822
gene01438-v1.0-hybrid
Fragaria vesca
gene01438-v1.0-hybrid
N
0.817
POPTR_0011s17180
Populus trichocarpa
POPTR_0011s17180
N
0.817
VIT_19s0015g01770
Vitis vinifera
VIT_19s0015g01770
N
0.810
evm.TU.supercontig_12.68
Carica papaya
evm.TU.supercontig_12.68
I
0.791
MDP0000167232
Malus domestica
MDP0000167232
N
0.763
SapurV1A.0338s0260
Salix purpurea
SapurV1A.0338s0260
I
0.758
Aquca_093_00004
Aquilegia coerulea
Aquca_093_00004
N
0.731
AMTR_s00061p00067260
Amborella trichopoda
AMTR_s00061p00067260
N
0.725
AMTR_s00089p00097770
Amborella trichopoda
AMTR_s00089p00097770
I
0.722
GLYMA04G12530
Glycine max
GLYMA04G12530
N
0.711
chr3.CM0047.510.nc
Lotus japonicus
chr3.CM0047.510.nc
N
0.706
Ca_20521
Cicer arietinum
Ca_20521
N
0.706
mgf009259m
Mimulus guttatus
mgf009259m
N
0.706