Alligator_sinensis_CCG001336.1 (Alligator sinensis)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04516 (CP2) IPR007604 Alligator_sinensis_CCG001336.1 T199499_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UBP1
M04893_2.00 		Homo sapiens
NDCYRGHNNNNDCYRGHN
NDCYRGHNNNNDCYRGHN		 SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX 		0.832 0.832
UBP1
M10614_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6_01 		0.832 0.832
UBP1
M10615_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6 		0.832 0.832
UBP1
M04894_2.00 		Homo sapiens
DWCYRGHHNNDDCYRGWH
DWCYRGHHNNDDCYRGWH		 SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX 		0.832 0.832
ENSGALG00000002235
M02030_2.00 		Gallus gallus
AACCGGTTA
TAACCGGTT		 PBM
Weirauch et al.(2014)
pTH8565 		0.823 0.823
TFCP2L1
M04885_2.00 		Homo sapiens
DCYRGHHNNNDCYRGH
DCYRGHNNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX 		0.777 0.777
TFCP2L1
M10609_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP9_01 		0.777 0.777
TFCP2L1
M04886_2.00 		Homo sapiens
DCYRGHHNNDDCYRGH
DCYRGHHNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX 		0.777 0.777
Tcfcp2l1
M08029_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1 		0.741 0.741
Tcfcp2l1
M08030_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1 		0.741 0.741
Tcfcp2l1
M09127_2.00 		Mus musculus
DDCYRGYTYHNDCYRGHYB
VRDCYRGHNDRARCYRGHH		 Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C 		0.741 0.741
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001336.1 Grainyhead 1320 1544

Links

Other Grainyhead family TFs
Other Alligator sinensis TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pvit_12019 Pogona vitticeps Pvit_12019 I 0.973
ENSPSIG00000003763 Pelodiscus sinensis ENSPSIG00000003763 I 0.941
UBP1 Procavia capensis ENSPCAG00000008237 I 0.928
UBP1 Meleagris gallopavo ENSMGAG00000011814 I 0.914
UBP1 Felis catus ENSFCAG00000006123 I 0.909
UBP1 Equus caballus ENSECAG00000018555 I 0.909
Myotis_brandtii_UBP1_10023937 Myotis brandtii Myotis_brandtii_UBP1_10023937 I 0.905
UBP1 Tursiops truncatus ENSTTRG00000016791 I 0.905
UBP1 Sus scrofa ENSSSCG00000011235 I 0.905
UBP1 Sorex araneus ENSSARG00000008670 I 0.900
ENSP00000283628-D1 Bos grunniens ENSP00000283628-D1 I 0.900
Ubp1 Dipodomys ordii ENSDORG00000010133 I 0.895
ENSOARG00000015881 Ovis aries ENSOARG00000015881 I 0.895
UBP1 Echinops telfairi ENSETEG00000016510 I 0.882
ENSDNOG00000019550 Dasypus novemcinctus ENSDNOG00000019550 I 0.873
ENSLAFG00000030783 Loxodonta africana ENSLAFG00000030783 I 0.873
Ubp1 Mus musculus ENSMUSG00000009741 I 0.871
ENSLOCG00000004816 Lepisosteus oculatus ENSLOCG00000004816 I 0.850
ENSFALG00000004962 Ficedula albicollis ENSFALG00000004962 I 0.845
Tal_R012945 Tyto alba Tal_R012945 I 0.841
Brh_R008147 Buceros rhinoceros Brh_R008147 I 0.841
ENSGALG00000011980 Gallus gallus ENSGALG00000011980 I 0.841
Aan_R001501 Calypte anna Aan_R001501 I 0.841
Gfo_R001955 Geospiza fortis Gfo_R001955 I 0.841
Afo_R010081 Aptenodytes forsteri Afo_R010081 I 0.841
ENSTGUG00000015251 Taeniopygia guttata ENSTGUG00000015251 I 0.839
Ogr01415 Ophisaurus gracilis Ogr01415 I 0.836
UBP1 Canis familiaris ENSCAFG00000004598 I 0.836
ENSAMEG00000002341 Ailuropoda melanoleuca ENSAMEG00000002341 I 0.836
UBP1 Pteropus vampyrus ENSPVAG00000004158 I 0.836
ENSMPUG00000013008 Mustela putorius furo ENSMPUG00000013008 I 0.836
UBP1 Myotis lucifugus ENSMLUG00000010827 I 0.836
ENSDNOG00000018905 Dasypus novemcinctus ENSDNOG00000018905 I 0.836
UBP1 Oryctolagus cuniculus ENSOCUG00000011063 I 0.832
UBP1 Callithrix jacchus ENSCJAG00000012030 I 0.832
TFCP2 Loxodonta africana ENSLAFG00000009123 I 0.832
ENSP00000283629 Macaca fascicularis ENSP00000283629 I 0.832
ENSCSAG00000009395 Chlorocebus sabaeus ENSCSAG00000009395 I 0.832
ENSPPYG00000014030 Pongo abelii ENSPPYG00000014030 I 0.832
UBP1 Homo sapiens ENSG00000153560 D 0.832
TFCP2 Homo sapiens ENSG00000135457 D 0.832
TFCP2 Macaca mulatta ENSMMUG00000000152 I 0.832
UBP1 Cavia porcellus ENSCPOG00000009270 I 0.832
UBP1 Pan troglodytes ENSPTRG00000014733 I 0.832
ENSNLEG00000004651 Nomascus leucogenys ENSNLEG00000004651 I 0.832
UBP1 Macaca mulatta ENSMMUG00000016917 I 0.832
TFCP2 Myotis lucifugus ENSMLUG00000013918 I 0.827
TFCP2 Pan troglodytes ENSPTRG00000004949 I 0.827
ENSMODG00000002605 Monodelphis domestica ENSMODG00000002605 I 0.827
ENSPANG00000019744 Papio anubis ENSPANG00000019744 I 0.827
ENSAMEG00000002108 Ailuropoda melanoleuca ENSAMEG00000002108 I 0.827
UBP1 Ochotona princeps ENSOPRG00000012913 I 0.827
TFCP2 Bos taurus ENSBTAG00000019312 I 0.827
TFCP2 Canis familiaris ENSCAFG00000007831 I 0.827
TFCP2 Callithrix jacchus ENSCJAG00000017599 I 0.827
ENSPPYG00000004522 Pongo abelii ENSPPYG00000004522 I 0.827
TFCP2 Otolemur garnettii ENSOGAG00000007969 I 0.827
UBP1 Otolemur garnettii ENSOGAG00000000962 I 0.827
ENSP00000283628-D2 Bos grunniens ENSP00000283628-D2 I 0.827
ENSCSAG00000005909 Chlorocebus sabaeus ENSCSAG00000005909 I 0.827
TFCP2 Equus caballus ENSECAG00000020650 I 0.827
ENSNLEG00000017779 Nomascus leucogenys ENSNLEG00000017779 I 0.827
TFCP2 Felis catus ENSFCAG00000030292 I 0.827
UBP1 Bos taurus ENSBTAG00000003968 I 0.827
tfcp2 Oryzias latipes ENSORLG00000015644 I 0.827
ENSSHAG00000000901 Sarcophilus harrisii ENSSHAG00000000901 I 0.827
Ubp1 Rattus norvegicus ENSRNOG00000009729 I 0.827
Tfcp2 Rattus norvegicus ENSRNOG00000032395 I 0.823
ENSOARG00000017390 Ovis aries ENSOARG00000017390 I 0.823
ENSSHAG00000002389 Sarcophilus harrisii ENSSHAG00000002389 I 0.823
UBP1 Ornithorhynchus anatinus ENSOANG00000008309 I 0.823
TFCP2 Ochotona princeps ENSOPRG00000005747 I 0.823
ENSGALG00000002235 Gallus gallus ENSGALG00000002235 D 0.823
ENSAMXG00000016608 Astyanax mexicanus ENSAMXG00000016608 I 0.823
tfcp2 Gasterosteus aculeatus ENSGACG00000010929 I 0.823
Pvit_07455 Pogona vitticeps Pvit_07455 I 0.823
Myotis_brandtii_TFCP2_10023086 Myotis brandtii Myotis_brandtii_TFCP2_10023086 I 0.823
pou6f1 Takifugu rubripes ENSTRUG00000014900 I 0.823
UBP1 Anolis carolinensis ENSACAG00000013565 I 0.823
TFCP2 Tursiops truncatus ENSTTRG00000013836 I 0.823
TFCP2 Anolis carolinensis ENSACAG00000012289 I 0.823
ENSAPLG00000001472 Anas platyrhynchos ENSAPLG00000001472 I 0.818
tfcp2 Danio rerio ENSDARG00000060306 I 0.818
ENSPFOG00000011621 Poecilia formosa ENSPFOG00000011621 I 0.818
ENSXMAG00000005202 Xiphophorus maculatus ENSXMAG00000005202 I 0.818
ENSONIG00000016680 Oreochromis niloticus ENSONIG00000016680 I 0.814
ENSPANG00000003702 Papio anubis ENSPANG00000003702 I 0.814
ENSSTOG00000012083 Ictidomys tridecemlineatus ENSSTOG00000012083 I 0.814
TFCP2 Vicugna pacos ENSVPAG00000007617 I 0.809
ENSGMOG00000007483 Gadus morhua ENSGMOG00000007483 I 0.809
Tal_R010177 Tyto alba Tal_R010177 I 0.809
Gfo_R015659 Geospiza fortis Gfo_R015659 I 0.809
Aan_R009566 Calypte anna Aan_R009566 I 0.809
ENSXMAG00000003023 Xiphophorus maculatus ENSXMAG00000003023 I 0.805
Cmyd_10002729 Chelonia mydas Cmyd_10002729 I 0.805
Tfcp2 Mus musculus ENSMUSG00000009733 I 0.805
ENSPFOG00000008378 Poecilia formosa ENSPFOG00000008378 I 0.795
ENSSHAG00000005805 Sarcophilus harrisii ENSSHAG00000005805 I 0.791
ubp1 Tetraodon nigroviridis ENSTNIG00000016974 I 0.791
ubp1 Takifugu rubripes ENSTRUG00000013570 I 0.786
TFCP2L1 Monodelphis domestica ENSMODG00000000229 I 0.786
ubp1 Oryzias latipes ENSORLG00000011706 I 0.786
ENSSHAG00000013877 Sarcophilus harrisii ENSSHAG00000013877 I 0.786
ENSLACG00000000718 Latimeria chalumnae ENSLACG00000000718 I 0.782
TFCP2L1 Otolemur garnettii ENSOGAG00000012031 I 0.777
ENSPPYG00000012777 Pongo abelii ENSPPYG00000012777 I 0.777
ENSPANG00000016702 Papio anubis ENSPANG00000016702 I 0.777
TFCP2L1 Gorilla gorilla ENSGGOG00000001680 I 0.777
ENSCSAG00000016679 Chlorocebus sabaeus ENSCSAG00000016679 I 0.777
TFCP2L1 Homo sapiens ENSG00000115112 D 0.777
TFCP2L1 Oryctolagus cuniculus ENSOCUG00000006877 I 0.773
TFCP2L1 Ornithorhynchus anatinus ENSOANG00000007591 I 0.773
ENSPMAG00000003474 Petromyzon marinus ENSPMAG00000003474 I 0.773
TFCP2L1 Callithrix jacchus ENSCJAG00000013356 I 0.773
ENSOARG00000013124 Ovis aries ENSOARG00000013124 I 0.768
TFCP2L1 Anolis carolinensis ENSACAG00000004268 I 0.768
TFCP2L1 Pan troglodytes ENSPTRG00000012415 I 0.768
tfcp2.L Xenopus laevis XB-GENE-865546 I 0.767
TFCP2L1 Loxodonta africana ENSLAFG00000006873 I 0.764
TFCP2L1 Felis catus ENSFCAG00000012143 I 0.764
TFCP2L1 Bos taurus ENSBTAG00000007765 I 0.764
TFCP2L1 Microcebus murinus ENSMICG00000007161 I 0.764
TFCP2L1 Canis familiaris ENSCAFG00000004788 I 0.764
TFCP2L1 Sus scrofa ENSSSCG00000015732 I 0.764
ENSNLEG00000000988 Nomascus leucogenys ENSNLEG00000000988 I 0.764
TFCP2L1 Gallus gallus ENSGALG00000011635 I 0.759
Tfcp2l1 Rattus norvegicus ENSRNOG00000002414 I 0.759
ENSAMEG00000005284 Ailuropoda melanoleuca ENSAMEG00000005284 I 0.759
Pvit_06471 Pogona vitticeps Pvit_06471 I 0.759
ENSPSIG00000008408 Pelodiscus sinensis ENSPSIG00000008408 I 0.759
ubp1 Danio rerio ENSDARG00000018000 I 0.759
ENSTSYG00000013882 Tarsius syrichta ENSTSYG00000013882 I 0.759
Cmyd_10009085 Chelonia mydas Cmyd_10009085 I 0.759
Myotis_brandtii_TFCP2L1_10019079 Myotis brandtii Myotis_brandtii_TFCP2L1_10019079 I 0.759
ENSP00000263707-D1 Bos grunniens ENSP00000263707-D1 I 0.759
ENSFALG00000013230 Ficedula albicollis ENSFALG00000013230 I 0.755
UBP1 Taeniopygia guttata ENSTGUG00000001752 I 0.755
ENSSTOG00000013080 Ictidomys tridecemlineatus ENSSTOG00000013080 I 0.755
ENSAPLG00000015648 Anas platyrhynchos ENSAPLG00000015648 I 0.755
TFCP2 Pteropus vampyrus ENSPVAG00000014772 I 0.755
TFCP2L1 Cavia porcellus ENSCPOG00000011523 I 0.755
TFCP2L1 Equus caballus ENSECAG00000024837 I 0.755
Alligator_sinensis_CCG001515.1 Alligator sinensis Alligator_sinensis_CCG001515.1 I 0.755
ENSP00000257915 Macaca fascicularis ENSP00000257915 I 0.750
Alligator_sinensis_CCG015050.1 Alligator sinensis Alligator_sinensis_CCG015050.1 I 0.750
TFCP2L1 Meleagris gallopavo ENSMGAG00000011889 I 0.750
Afo_R010616 Aptenodytes forsteri Afo_R010616 I 0.750
ENSPSIG00000015527 Pelodiscus sinensis ENSPSIG00000015527 I 0.750
ENSPMAG00000006794 Petromyzon marinus ENSPMAG00000006794 I 0.750
ENSAPLG00000012157 Anas platyrhynchos ENSAPLG00000012157 I 0.750
ENSSTOG00000009123 Ictidomys tridecemlineatus ENSSTOG00000009123 I 0.750
ENSDNOG00000017309 Dasypus novemcinctus ENSDNOG00000017309 I 0.745
Gfo_R001211 Geospiza fortis Gfo_R001211 I 0.745
TFCP2 Cavia porcellus ENSCPOG00000007923 I 0.745
TFCP2L1 Taeniopygia guttata ENSTGUG00000004573 I 0.745
tfcp2l1.S Xenopus laevis XB-GENE-6255174 I 0.745
tfcp2 Tetraodon nigroviridis ENSTNIG00000012528 I 0.745
ENSMODG00000014457 Monodelphis domestica ENSMODG00000014457 I 0.745
Tal_R011103 Tyto alba Tal_R011103 I 0.741
tfcp2 Xenopus tropicalis XB-GENE-485720 I 0.741
Aan_R003641 Calypte anna Aan_R003641 I 0.741
Tcfcp2l1 Mus musculus ENSMUSG00000026380 D 0.741
Afo_R006827 Aptenodytes forsteri Afo_R006827 I 0.741
Brh_R004848 Buceros rhinoceros Brh_R004848 I 0.741
AAI06326 Xenopus laevis AAI06326 I 0.736
AAP78771 Xenopus laevis AAP78771 I 0.736
tfcp2l1.L Xenopus laevis XB-GENE-997202 I 0.736
ENSLOCG00000002070 Lepisosteus oculatus ENSLOCG00000002070 I 0.736
ENSLOCG00000002718 Lepisosteus oculatus ENSLOCG00000002718 I 0.727
Ogr17000 Ophisaurus gracilis Ogr17000 I 0.723
ENSLACG00000017694 Latimeria chalumnae ENSLACG00000017694 I 0.718
TFCP2L1 Macaca mulatta ENSMMUG00000008829 I 0.718
ENSONIG00000002320 Oreochromis niloticus ENSONIG00000002320 I 0.714
ubp1 Gasterosteus aculeatus ENSGACG00000005520 I 0.714
ENSMPUG00000001036 Mustela putorius furo ENSMPUG00000001036 I 0.714
ENSGMOG00000010354 Gadus morhua ENSGMOG00000010354 I 0.709
ENSFALG00000004724 Ficedula albicollis ENSFALG00000004724 I 0.700
ENSSHAG00000002647 Sarcophilus harrisii ENSSHAG00000002647 I 0.700