tfcp2 (Tetraodon nigroviridis)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04516 (CP2) IPR007604 ENSTNIG00000012528 T199264_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ENSGALG00000002235
M02030_2.00
Gallus gallus
AACCGGTTA

TAACCGGTT
PBM
Weirauch et al.(2014)
pTH8565
0.853 0.853
UBP1
M04893_2.00
Homo sapiens
NDCYRGHNNNNDCYRGHN

NDCYRGHNNNNDCYRGHN
SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX
0.826 0.826
UBP1
M10614_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6_01
0.826 0.826
UBP1
M10615_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP1_Q6
0.826 0.826
UBP1
M04894_2.00
Homo sapiens
DWCYRGHHNNDDCYRGWH

DWCYRGHHNNDDCYRGWH
SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX
0.826 0.826
TFCP2
M03074_2.00
Homo sapiens
DAWCCGGTTY

RAACCGGWTH
SELEX
Jolma et al.(2013)
TFCP2_1
0.767 0.767
TFCP2
M03075_2.00
Homo sapiens
WCCGGWWHDAWCYGGW

WCCRGWTHDWWCCGGW
SELEX
Jolma et al.(2013)
TFCP2_2
0.767 0.767
TFCP2
M04889_2.00
Homo sapiens
DWCYRGWHNNDWCYRGWH

DWCYRGWHNNDWCYRGWH
SELEX
Yin et al.(2017)
TFCP2_eDBD_HT-SELEX
0.767 0.767
TFCP2
M04891_2.00
Homo sapiens
AWCYGGTTHNDACCGGTW

WACCGGTHNDAACCRGWT
SELEX
Yin et al.(2017)
TFCP2_FL_HT-SELEX
0.767 0.767
TFCP2
M10610_2.00
Homo sapiens
CTKGKTHKDGC

GCHMDAMCMAG
Transfac
Matys et al.(2006)
V$CP2_01
0.767 0.767
TFCP2
M10611_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_02
0.767 0.767
TFCP2
M10612_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_Q4
0.767 0.767
TFCP2
M10613_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CP2_Q6
0.767 0.767
TFCP2
M04890_2.00
Homo sapiens
DWCYRGWHNNDWCYRGWH

DWCYRGWHNNDWCYRGWH
SELEX
Yin et al.(2017)
TFCP2_eDBD_Methyl-HT-SELEX
0.767 0.767
TFCP2
M04892_2.00
Homo sapiens
AWCCGGWTNDAWCCGGTT

AACCGGWTHNAACCGGWT
SELEX
Yin et al.(2017)
TFCP2_FL_Methyl-HT-SELEX
0.767 0.767
TFCP2L1
M04885_2.00
Homo sapiens
DCYRGHHNNNDCYRGH

DCYRGHNNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX
0.763 0.763
TFCP2L1
M10609_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LBP9_01
0.763 0.763
TFCP2L1
M04886_2.00
Homo sapiens
DCYRGHHNNDDCYRGH

DCYRGHHNNDDCYRGH
SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX
0.763 0.763
Tcfcp2l1
M08029_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1
0.739 0.739
Tcfcp2l1
M08030_2.00
Mus musculus
CYRGYYYHDDCYRGHYYNNNN

NNNNRRDCYRGHHDRRRCYRG
ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1
0.732 0.732
Tcfcp2l1
M09127_2.00
Mus musculus
DDCYRGYTYHNDCYRGHYB

VRDCYRGHNDRARCYRGHH
Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C
0.732 0.732
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000002177 Grainyhead 25 242
ENSTNIP00000015497 Grainyhead 41 260

Links

Other Grainyhead family TFs
Other Tetraodon nigroviridis TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
pou6f1 Takifugu rubripes ENSTRUG00000014900 I 0.995
Afo_R010616 Aptenodytes forsteri Afo_R010616 I 0.937
ENSPSIG00000015527 Pelodiscus sinensis ENSPSIG00000015527 I 0.933
TFCP2 Pteropus vampyrus ENSPVAG00000014772 I 0.924
ENSAPLG00000012157 Anas platyrhynchos ENSAPLG00000012157 I 0.924
tfcp2 Xenopus tropicalis XB-GENE-485720 I 0.924
tfcp2.L Xenopus laevis XB-GENE-865546 I 0.919
ENSDNOG00000017309 Dasypus novemcinctus ENSDNOG00000017309 I 0.917
ENSTGUG00000015251 Taeniopygia guttata ENSTGUG00000015251 I 0.913
AAP78771 Xenopus laevis AAP78771 I 0.910
Alligator_sinensis_CCG015050.1 Alligator sinensis Alligator_sinensis_CCG015050.1 I 0.910
AAI06326 Xenopus laevis AAI06326 I 0.901
ENSSTOG00000009123 Ictidomys tridecemlineatus ENSSTOG00000009123 I 0.900
TFCP2 Callithrix jacchus ENSCJAG00000017599 I 0.900
ENSPANG00000019744 Papio anubis ENSPANG00000019744 I 0.900
ENSP00000257915 Macaca fascicularis ENSP00000257915 I 0.900
ENSLACG00000000718 Latimeria chalumnae ENSLACG00000000718 I 0.899
ENSAMXG00000016608 Astyanax mexicanus ENSAMXG00000016608 I 0.891
ENSONIG00000016680 Oreochromis niloticus ENSONIG00000016680 I 0.891
TFCP2 Cavia porcellus ENSCPOG00000007923 I 0.886
ENSXMAG00000005202 Xiphophorus maculatus ENSXMAG00000005202 I 0.882
ENSPFOG00000011621 Poecilia formosa ENSPFOG00000011621 I 0.878
tfcp2 Danio rerio ENSDARG00000060306 I 0.877
tfcp2 Gasterosteus aculeatus ENSGACG00000010929 I 0.872
ENSLACG00000012609 Latimeria chalumnae ENSLACG00000012609 I 0.869
tfcp2 Oryzias latipes ENSORLG00000015644 I 0.867
ENSLOCG00000004816 Lepisosteus oculatus ENSLOCG00000004816 I 0.864
Pvit_12019 Pogona vitticeps Pvit_12019 I 0.859
ENSGMOG00000007483 Gadus morhua ENSGMOG00000007483 I 0.858
ENSGALG00000002235 Gallus gallus ENSGALG00000002235 D 0.853
ENSOARG00000015881 Ovis aries ENSOARG00000015881 I 0.851
ENSAMEG00000002341 Ailuropoda melanoleuca ENSAMEG00000002341 I 0.851
ENSMPUG00000013008 Mustela putorius furo ENSMPUG00000013008 I 0.851
UBP1 Canis familiaris ENSCAFG00000004598 I 0.851
ENSPMAG00000007229 Petromyzon marinus ENSPMAG00000007229 I 0.850
Cmyd_10002729 Chelonia mydas Cmyd_10002729 I 0.848
Aan_R009566 Calypte anna Aan_R009566 I 0.848
Tal_R010177 Tyto alba Tal_R010177 I 0.848
TFCP2 Oryctolagus cuniculus ENSOCUG00000009026 I 0.844
TFCP2 Otolemur garnettii ENSOGAG00000007969 I 0.844
ENSNLEG00000017779 Nomascus leucogenys ENSNLEG00000017779 I 0.844
TFCP2 Loxodonta africana ENSLAFG00000009123 I 0.844
TFCP2 Macaca mulatta ENSMMUG00000000152 I 0.844
ENSPPYG00000004522 Pongo abelii ENSPPYG00000004522 I 0.844
UBP1 Bos taurus ENSBTAG00000003968 I 0.844
TFCP2 Canis familiaris ENSCAFG00000007831 I 0.844
ENSSHAG00000000901 Sarcophilus harrisii ENSSHAG00000000901 I 0.844
ENSAMEG00000002108 Ailuropoda melanoleuca ENSAMEG00000002108 I 0.844
TFCP2 Anolis carolinensis ENSACAG00000012289 I 0.844
TFCP2 Pan troglodytes ENSPTRG00000004949 I 0.844
ENSCSAG00000005909 Chlorocebus sabaeus ENSCSAG00000005909 I 0.844
TFCP2 Felis catus ENSFCAG00000030292 I 0.844
TFCP2 Homo sapiens ENSG00000135457 D 0.844
TFCP2 Equus caballus ENSECAG00000020650 I 0.844
Pvit_07455 Pogona vitticeps Pvit_07455 I 0.844
Tfcp2 Rattus norvegicus ENSRNOG00000032395 I 0.843
UBP1 Otolemur garnettii ENSOGAG00000000962 I 0.841
UBP1 Myotis lucifugus ENSMLUG00000010827 I 0.839
TFCP2 Myotis lucifugus ENSMLUG00000013918 I 0.839
UBP1 Oryctolagus cuniculus ENSOCUG00000011063 I 0.839
ENSP00000283628-D2 Bos grunniens ENSP00000283628-D2 I 0.839
TFCP2 Bos taurus ENSBTAG00000019312 I 0.839
UBP1 Pteropus vampyrus ENSPVAG00000004158 I 0.839
Ubp1 Mus musculus ENSMUSG00000009741 I 0.837
Tfcp2 Mus musculus ENSMUSG00000009733 I 0.834
ENSOARG00000017390 Ovis aries ENSOARG00000017390 I 0.834
ENSPPYG00000014030 Pongo abelii ENSPPYG00000014030 I 0.834
TFCP2 Ochotona princeps ENSOPRG00000005747 I 0.834
ENSNLEG00000004651 Nomascus leucogenys ENSNLEG00000004651 I 0.834
UBP1 Pan troglodytes ENSPTRG00000014733 I 0.834
TFCP2 Tursiops truncatus ENSTTRG00000013836 I 0.834
TFCP2 Vicugna pacos ENSVPAG00000007617 I 0.834
ENSP00000283629 Macaca fascicularis ENSP00000283629 I 0.834
UBP1 Cavia porcellus ENSCPOG00000009270 I 0.834
ENSCSAG00000009395 Chlorocebus sabaeus ENSCSAG00000009395 I 0.834
ENSFALG00000004962 Ficedula albicollis ENSFALG00000004962 I 0.834
UBP1 Callithrix jacchus ENSCJAG00000012030 I 0.834
UBP1 Macaca mulatta ENSMMUG00000016917 I 0.834
UBP1 Anolis carolinensis ENSACAG00000013565 I 0.834
Myotis_brandtii_TFCP2_10023086 Myotis brandtii Myotis_brandtii_TFCP2_10023086 I 0.834
UBP1 Homo sapiens ENSG00000153560 D 0.834
ENSGALG00000011980 Gallus gallus ENSGALG00000011980 I 0.833
Ubp1 Rattus norvegicus ENSRNOG00000009729 I 0.829
Gfo_R015659 Geospiza fortis Gfo_R015659 I 0.829
UBP1 Ochotona princeps ENSOPRG00000012913 I 0.829
ENSPMAG00000006794 Petromyzon marinus ENSPMAG00000006794 I 0.828
Ogr01415 Ophisaurus gracilis Ogr01415 I 0.828
UBP1 Ornithorhynchus anatinus ENSOANG00000008309 I 0.825
Ogr17000 Ophisaurus gracilis Ogr17000 I 0.823
Tal_R012945 Tyto alba Tal_R012945 I 0.820
Brh_R008147 Buceros rhinoceros Brh_R008147 I 0.820
Aan_R001501 Calypte anna Aan_R001501 I 0.820
Afo_R010081 Aptenodytes forsteri Afo_R010081 I 0.820
Gfo_R001955 Geospiza fortis Gfo_R001955 I 0.820
ENSLOCG00000002718 Lepisosteus oculatus ENSLOCG00000002718 I 0.820
ENSPANG00000003702 Papio anubis ENSPANG00000003702 I 0.815
ubp1 Gasterosteus aculeatus ENSGACG00000005520 I 0.810
ENSONIG00000002320 Oreochromis niloticus ENSONIG00000002320 I 0.806
ENSGMOG00000010354 Gadus morhua ENSGMOG00000010354 I 0.801
ubp1 Takifugu rubripes ENSTRUG00000013570 I 0.801
UBP1 Procavia capensis ENSPCAG00000008237 I 0.798
UBP1 Tursiops truncatus ENSTTRG00000016791 I 0.798
Myotis_brandtii_UBP1_10023937 Myotis brandtii Myotis_brandtii_UBP1_10023937 I 0.796
ENSP00000283628-D1 Bos grunniens ENSP00000283628-D1 I 0.796
UBP1 Sus scrofa ENSSSCG00000011235 I 0.796
ENSAPLG00000001472 Anas platyrhynchos ENSAPLG00000001472 I 0.796
ENSLAFG00000030783 Loxodonta africana ENSLAFG00000030783 I 0.793
UBP1 Equus caballus ENSECAG00000018555 I 0.791
UBP1 Felis catus ENSFCAG00000006123 I 0.791
ENSMODG00000002605 Monodelphis domestica ENSMODG00000002605 I 0.790
UBP1 Echinops telfairi ENSETEG00000016510 I 0.788
UBP1 Sorex araneus ENSSARG00000008670 I 0.787
Tal_R011103 Tyto alba Tal_R011103 I 0.782
Aan_R003641 Calypte anna Aan_R003641 I 0.782
Ubp1 Dipodomys ordii ENSDORG00000010133 I 0.782
Afo_R006827 Aptenodytes forsteri Afo_R006827 I 0.782
Brh_R004848 Buceros rhinoceros Brh_R004848 I 0.782
tfcp2l1.S Xenopus laevis XB-GENE-6255174 I 0.778
ENSSHAG00000002389 Sarcophilus harrisii ENSSHAG00000002389 I 0.777
Myotis_brandtii_TFCP2L1_10019079 Myotis brandtii Myotis_brandtii_TFCP2L1_10019079 I 0.777
ENSLACG00000017694 Latimeria chalumnae ENSLACG00000017694 I 0.777
ENSAPLG00000015648 Anas platyrhynchos ENSAPLG00000015648 I 0.775
TFCP2L1 Gallus gallus ENSGALG00000011635 I 0.773
ENSPSIG00000008408 Pelodiscus sinensis ENSPSIG00000008408 I 0.773
TFCP2L1 Monodelphis domestica ENSMODG00000000229 I 0.773
ENSSHAG00000013877 Sarcophilus harrisii ENSSHAG00000013877 I 0.773
ENSDNOG00000019550 Dasypus novemcinctus ENSDNOG00000019550 I 0.773
TFCP2L1 Otolemur garnettii ENSOGAG00000012031 I 0.770
ENSCSAG00000016679 Chlorocebus sabaeus ENSCSAG00000016679 I 0.770
ENSPANG00000016702 Papio anubis ENSPANG00000016702 I 0.770
ENSPPYG00000012777 Pongo abelii ENSPPYG00000012777 I 0.770
TFCP2L1 Loxodonta africana ENSLAFG00000006873 I 0.770
TFCP2L1 Gorilla gorilla ENSGGOG00000001680 I 0.770
TFCP2L1 Homo sapiens ENSG00000115112 D 0.770
ENSPMAG00000003474 Petromyzon marinus ENSPMAG00000003474 I 0.768
ENSFALG00000013230 Ficedula albicollis ENSFALG00000013230 I 0.768
TFCP2L1 Ornithorhynchus anatinus ENSOANG00000007591 I 0.768
TFCP2L1 Meleagris gallopavo ENSMGAG00000011889 I 0.768
Alligator_sinensis_CCG001515.1 Alligator sinensis Alligator_sinensis_CCG001515.1 I 0.768
TFCP2L1 Taeniopygia guttata ENSTGUG00000004573 I 0.768
UBP1 Meleagris gallopavo ENSMGAG00000011814 I 0.766
tfcp2l1.L Xenopus laevis XB-GENE-997202 I 0.763
TFCP2L1 Felis catus ENSFCAG00000012143 I 0.763
ENSMPUG00000001036 Mustela putorius furo ENSMPUG00000001036 I 0.763
Gfo_R001211 Geospiza fortis Gfo_R001211 I 0.763
ENSOARG00000013124 Ovis aries ENSOARG00000013124 I 0.763
TFCP2L1 Canis familiaris ENSCAFG00000004788 I 0.763
TFCP2L1 Oryctolagus cuniculus ENSOCUG00000006877 I 0.763
TFCP2L1 Equus caballus ENSECAG00000024837 I 0.763
ENSXMAG00000003023 Xiphophorus maculatus ENSXMAG00000003023 I 0.763
ENSAMEG00000005284 Ailuropoda melanoleuca ENSAMEG00000005284 I 0.763
TFCP2L1 Anolis carolinensis ENSACAG00000004268 I 0.763
TFCP2L1 Sus scrofa ENSSSCG00000015732 I 0.763
ENSPSIG00000003763 Pelodiscus sinensis ENSPSIG00000003763 I 0.762
TFCP2L1 Erinaceus europaeus ENSEEUG00000011003 I 0.762
TFCP2L1 Microcebus murinus ENSMICG00000007161 I 0.758
Pvit_06471 Pogona vitticeps Pvit_06471 I 0.758
ENSSTOG00000012083 Ictidomys tridecemlineatus ENSSTOG00000012083 I 0.758
Cmyd_10009085 Chelonia mydas Cmyd_10009085 I 0.758
ENSTSYG00000013882 Tarsius syrichta ENSTSYG00000013882 I 0.758
TFCP2L1 Pan troglodytes ENSPTRG00000012415 I 0.758
TFCP2L1 Bos taurus ENSBTAG00000007765 I 0.758
ENSNLEG00000000988 Nomascus leucogenys ENSNLEG00000000988 I 0.758
ubp1 Oryzias latipes ENSORLG00000011706 I 0.754
ENSP00000263707-D1 Bos grunniens ENSP00000263707-D1 I 0.754
ENSPFOG00000008378 Poecilia formosa ENSPFOG00000008378 I 0.754
TFCP2L1 Cavia porcellus ENSCPOG00000011523 I 0.754
ubp1 Tetraodon nigroviridis ENSTNIG00000016974 I 0.754
TFCP2L1 Callithrix jacchus ENSCJAG00000013356 I 0.754
Tfcp2l1 Rattus norvegicus ENSRNOG00000002414 I 0.749
Alligator_sinensis_CCG001336.1 Alligator sinensis Alligator_sinensis_CCG001336.1 I 0.745
UBP1 Taeniopygia guttata ENSTGUG00000001752 I 0.744
ENSDNOG00000018905 Dasypus novemcinctus ENSDNOG00000018905 I 0.744
ENSSTOG00000013080 Ictidomys tridecemlineatus ENSSTOG00000013080 I 0.744
Tcfcp2l1 Mus musculus ENSMUSG00000026380 D 0.739
ubp1 Danio rerio ENSDARG00000018000 I 0.725
ENSSHAG00000005805 Sarcophilus harrisii ENSSHAG00000005805 I 0.725
ENSMODG00000014457 Monodelphis domestica ENSMODG00000014457 I 0.723
ENSSHAG00000002647 Sarcophilus harrisii ENSSHAG00000002647 I 0.720
ENSLOCG00000002070 Lepisosteus oculatus ENSLOCG00000002070 I 0.720
TFCP2L1 Macaca mulatta ENSMMUG00000008829 I 0.720
ENSACAG00000017482 Anolis carolinensis ENSACAG00000017482 I 0.711
TFCP2 Procavia capensis ENSPCAG00000014181 I 0.707
tfcp2l1 Danio rerio ENSDARG00000029497 N 0.701
Ogr16171 Ophisaurus gracilis Ogr16171 I 0.701