LjSGA_017893.1 (Lotus japonicus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 LjSGA_017893.1 T247438_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.824 0.824
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_017893.1 LOB 4 88

Links

Other LOB family TFs
Other Lotus japonicus TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.859
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.859
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.859
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.859
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.859
MDP0000130659 Malus domestica MDP0000130659 I 0.859
Cla019510 Citrullus lanatus Cla019510 I 0.859
TCM_012190 Theobroma cacao TCM_012190 I 0.859
MDP0000254288 Malus domestica MDP0000254288 I 0.859
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.847
LOB Vitis vinifera VIT_17s0000g09010 I 0.847
30147.m013890 Ricinus communis 30147.m013890 I 0.847
Pm024312 Prunus mume Pm024312 I 0.847
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.847
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.847
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.847
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.847
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.835
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.835
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.835
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.835
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.835
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.835
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.835
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.835
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.824
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.824
LOB Arabidopsis lyrata scaffold_802995.1 I 0.824
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.824
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.824
Ca_07463 Cicer arietinum Ca_07463 I 0.824
Bra035860 Brassica rapa Bra035860 I 0.824
Bo3g104760 Brassica oleracea Bo3g104760 I 0.824
LOB Arabidopsis thaliana AT5G63090 D 0.824
Bra038606 Brassica rapa Bra038606 I 0.824
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.812
mgf024603m Mimulus guttatus mgf024603m I 0.812
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.800
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.800
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.800
PK21510.1 Cannabis sativa PK21510.1 I 0.800
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.788
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.788
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.788
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.788
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.788
OB01G14220 Oryza brachyantha OB01G14220 I 0.788
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.788
Si002632m.g Setaria italica Si002632m.g I 0.788
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.788
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.776
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.776
29917.m001993 Ricinus communis 29917.m001993 I 0.776
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.776
OBART01G04470 Oryza barthii OBART01G04470 I 0.776
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.776
Pm015649 Prunus mume Pm015649 I 0.776
OS01G0169400 Oryza sativa OS01G0169400 I 0.776
PK26472.1 Cannabis sativa PK26472.1 I 0.776
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.776
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.776
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.776
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.776
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.765
F775_25656 Aegilops tauschii F775_25656 I 0.765
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.765
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.765
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.765
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.765
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.765
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.753
MDP0000848210 Malus domestica MDP0000848210 I 0.753
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.753
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.753
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.753
Ca_24372 Cicer arietinum Ca_24372 I 0.753
Cla017388 Citrullus lanatus Cla017388 I 0.753
TCM_016952 Theobroma cacao TCM_016952 I 0.753
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.753
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.753
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.753
Cla010600 Citrullus lanatus Cla010600 I 0.753
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.753
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.741
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.741
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.741
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.741
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.741
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.741
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.727
Ca_08824 Cicer arietinum Ca_08824 I 0.727
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.718
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.718
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.718
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.718
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.718