orange1.1g036845m.g (Citrus sinensis)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 orange1.1g036845m.g T247162_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.929 0.929
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g036845m LOB 11 109

Links

Other LOB family TFs
Other Citrus sinensis TFs

232 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 1.000
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.960
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.949
Pm024312 Prunus mume Pm024312 I 0.949
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.949
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.939
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.939
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.939
MDP0000254288 Malus domestica MDP0000254288 I 0.939
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.939
MDP0000130659 Malus domestica MDP0000130659 I 0.939
TCM_012190 Theobroma cacao TCM_012190 I 0.939
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.939
LOB Vitis vinifera VIT_17s0000g09010 I 0.939
30147.m013890 Ricinus communis 30147.m013890 I 0.939
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.939
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.939
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.939
Cla019510 Citrullus lanatus Cla019510 I 0.939
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.939
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.939
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.939
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.939
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.929
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.929
LOB Arabidopsis lyrata scaffold_802995.1 I 0.929
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.929
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.929
Ca_08824 Cicer arietinum Ca_08824 I 0.929
Ca_07463 Cicer arietinum Ca_07463 I 0.929
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.929
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.929
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.929
PK21510.1 Cannabis sativa PK21510.1 I 0.929
LOB Arabidopsis thaliana AT5G63090 D 0.929
Bra038606 Brassica rapa Bra038606 I 0.929
Bo3g104760 Brassica oleracea Bo3g104760 I 0.929
Bo9g017470 Brassica oleracea Bo9g017470 I 0.919
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.919
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.919
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.909
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.909
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.909
mgf024603m Mimulus guttatus mgf024603m I 0.899
Bra035860 Brassica rapa Bra035860 I 0.899
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.889
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.889
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.889
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.889
OBART01G04470 Oryza barthii OBART01G04470 I 0.889
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.889
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.889
mgf016361m Mimulus guttatus mgf016361m I 0.889
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.889
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.889
OB01G14220 Oryza brachyantha OB01G14220 I 0.889
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.889
OS01G0169400 Oryza sativa OS01G0169400 I 0.889
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.889
Si002632m.g Setaria italica Si002632m.g I 0.889
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.889
AMTR_s00083p00067130 Amborella trichopoda AMTR_s00083p00067130 I 0.871
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.869
F775_25656 Aegilops tauschii F775_25656 I 0.869
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.869
PK26472.1 Cannabis sativa PK26472.1 I 0.869
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.869
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.869
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.869
Pm015649 Prunus mume Pm015649 I 0.869
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.869
29917.m001993 Ricinus communis 29917.m001993 I 0.869
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.869
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.859
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.859
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.859
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.859
MDP0000848210 Malus domestica MDP0000848210 I 0.859
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.859
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.848
TCM_016952 Theobroma cacao TCM_016952 I 0.848
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.848
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.848
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.848
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.848
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.848
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.848
Ca_24372 Cicer arietinum Ca_24372 I 0.848
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.848
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.848
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.838
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.838
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.838
Cla003499 Citrullus lanatus Cla003499 I 0.838
Cla017388 Citrullus lanatus Cla017388 I 0.838
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.838
Cla010600 Citrullus lanatus Cla010600 I 0.838
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.838
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.838
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.836
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.828
PK18922.1 Cannabis sativa PK18922.1 I 0.825
mgf003146m Mimulus guttatus mgf003146m I 0.818
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.818
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.818
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.818
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.818
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.815
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.808
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.808
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.808
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.808
LjSGA_017893.1 Lotus japonicus LjSGA_017893.1 I 0.800
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.798
Bo7g085860 Brassica oleracea Bo7g085860 I 0.778
LBD25 Arabidopsis thaliana AT3G27650 I 0.778
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.778
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.778
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.778
AMTR_s00066p00120340 Amborella trichopoda AMTR_s00066p00120340 I 0.778
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.778
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.778
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.778
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.778
Bra025294 Brassica rapa Bra025294 I 0.778
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.769
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.768
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.768
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.768
Ca_20200 Cicer arietinum Ca_20200 I 0.768
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.768
F775_33210 Aegilops tauschii F775_33210 I 0.767
PK17019.1 Cannabis sativa PK17019.1 I 0.765
Solyc03g063140.2 Solanum lycopersicum Solyc03g063140.2 I 0.758
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.758
Bo9g008330 Brassica oleracea Bo9g008330 I 0.758
Bra039072 Brassica rapa Bra039072 I 0.758
PGSC0003DMG400000974 Solanum tuberosum PGSC0003DMG400000974 I 0.758
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
TRIUR3_10339 Triticum urartu TRIUR3_10339 I 0.750
Gorai.007G350300 Gossypium raimondii Gorai.007G350300 I 0.747
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.747
Eucgr.C02148 Eucalyptus grandis Eucgr.C02148 I 0.747
Aquca_058_00006 Aquilegia coerulea Aquca_058_00006 I 0.747
mgf014755m Mimulus guttatus mgf014755m I 0.747
gene21541-v1.0-hybrid Fragaria vesca gene21541-v1.0-hybrid I 0.747
PRUPE_ppa027059mg Prunus persica PRUPE_ppa027059mg I 0.747
MDP0000273432 Malus domestica MDP0000273432 I 0.747
Solyc11g008830.1 Solanum lycopersicum Solyc11g008830.1 I 0.747
Cla005851 Citrullus lanatus Cla005851 I 0.747
AS2 Vitis vinifera VIT_00s0340g00090 I 0.747
MDP0000643326 Malus domestica MDP0000643326 I 0.737
Carubv10020974m.g Capsella rubella Carubv10020974m.g I 0.737
LBD6 Arabidopsis thaliana AT1G65620 D 0.737
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.737
Bra039733 Brassica rapa Bra039733 I 0.737
Bostr.26959s0351 Boechera stricta Bostr.26959s0351 I 0.737
Cagra.10809s0001 Capsella grandiflora Cagra.10809s0001 I 0.737
SapurV1A.0164s0090 Salix purpurea SapurV1A.0164s0090 I 0.737
Bo2g144870 Brassica oleracea Bo2g144870 I 0.737
29929.m004500 Ricinus communis 29929.m004500 I 0.737
cassava1141.valid.m1 Manihot esculenta cassava1141.valid.m1 I 0.737
evm.TU.supercontig_39.110 Carica papaya evm.TU.supercontig_39.110 I 0.737
TCM_024217 Theobroma cacao TCM_024217 I 0.737
Bo2g051420 Brassica oleracea Bo2g051420 I 0.737
Ciclev10017910m.g Citrus clementina Ciclev10017910m.g I 0.737
Thhalv10019572m.g Eutrema salsugineum Thhalv10019572m.g I 0.737
POPTR_0008s07930 Populus trichocarpa POPTR_0008s07930 I 0.737
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.737
orange1.1g027472m.g Citrus sinensis orange1.1g027472m.g I 0.737
Bra033019 Brassica rapa Bra033019 I 0.737
AS2 Arabidopsis lyrata fgenesh2_kg.2__796__AT1G65620.2 I 0.737
PK13228.1 Cannabis sativa PK13228.1 I 0.734
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.733
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.727
OB05G24560 Oryza brachyantha OB05G24560 I 0.727
ORGLA05G0143500 Oryza glaberrima ORGLA05G0143500 I 0.727
ORUFI05G17830 Oryza rufipogon ORUFI05G17830 I 0.727
MLOC_61156 Hordeum vulgare MLOC_61156 I 0.727
GLYMA11G17890 Glycine max GLYMA11G17890 I 0.727
BGIOSGA018046 Oryza indica BGIOSGA018046 I 0.727
F775_21760 Aegilops tauschii F775_21760 I 0.727
OS05G0417000 Oryza sativa OS05G0417000 I 0.727
OGLUM05G17630 Oryza glumaepatula OGLUM05G17630 I 0.727
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.722
Pavir.J22284 Panicum virgatum Pavir.J22284 I 0.717
TRIUR3_32863 Triticum urartu TRIUR3_32863 I 0.717
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.717
Si024114m.g Setaria italica Si024114m.g I 0.717
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.717
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.717
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.717
OB01G48740 Oryza brachyantha OB01G48740 I 0.717
MLOC_72525 Hordeum vulgare MLOC_72525 I 0.717
Bo2g167820 Brassica oleracea Bo2g167820 I 0.717
LBD6 Oryza indica BGIOSGA004955 I 0.717
BRADI2G25270 Brachypodium distachyon BRADI2G25270 I 0.717
BRADI2G57380 Brachypodium distachyon BRADI2G57380 I 0.717
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.717
F775_20715 Aegilops tauschii F775_20715 I 0.717
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.717
OBART01G39990 Oryza barthii OBART01G39990 I 0.717
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.717
TRAES3BF084400010CFD_g Triticum aestivum TRAES3BF084400010CFD_g I 0.717
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.717
LBD6 Oryza sativa OS01G0889400 I 0.717
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.717
Lus10013610.g Linum usitatissimum Lus10013610.g I 0.717
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.717
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.717
Si002599m.g Setaria italica Si002599m.g I 0.717
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.717
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.717
GSMUA_Achr10G20760_001 Musa acuminata GSMUA_Achr10G20760_001 I 0.713
gw1.7.209.1 Physcomitrella patens gw1.7.209.1 I 0.713
GSMUA_Achr2G23130_001 Musa acuminata GSMUA_Achr2G23130_001 I 0.709
mgf004296m Mimulus guttatus mgf004296m I 0.707
TCM_000560 Theobroma cacao TCM_000560 I 0.707
Sb09g020440 Sorghum bicolor Sb09g020440 I 0.707
Ciclev10027275m.g Citrus clementina Ciclev10027275m.g I 0.707
Gorai.007G210500 Gossypium raimondii Gorai.007G210500 I 0.707
SapurV1A.0641s0140 Salix purpurea SapurV1A.0641s0140 I 0.707
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.707
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.707
Pavir.J03307 Panicum virgatum Pavir.J03307 I 0.707
orange1.1g039589m.g Citrus sinensis orange1.1g039589m.g I 0.707
cassava32690.m1 Manihot esculenta cassava32690.m1 I 0.707
SapurV1A.0428s0090 Salix purpurea SapurV1A.0428s0090 I 0.707
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.707
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.707
SapurV1A.0811s0020 Salix purpurea SapurV1A.0811s0020 I 0.707
GSMUA_Achr6G04670_001 Musa acuminata GSMUA_Achr6G04670_001 I 0.707