CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava3724.m1
(
Manihot esculenta
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
cassava3724.m1
T246473_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LOB
M06966_2.00
Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN
Dap-seq
OMalley et al.(2016)
LOB_col_a
0.828
0.828
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava3724.m1
LOB
5
103
PCAACKSLRRKCLPNCIFSPYFPPEEPQKFAIVHKIFGASNVNKLLNEVLPHQREDAVKSLAYEAEARLKDPVYGCVGAISVLQSQVIKLQKELDATQA
Links
Other
LOB
family TFs
Other
Manihot esculenta
TFs
145 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29917.m001993
Ricinus communis
29917.m001993
I
0.899
Eucgr.J02237
Eucalyptus grandis
Eucgr.J02237
I
0.899
cassava12464.valid.m1
Manihot esculenta
cassava12464.valid.m1
I
0.899
POPTR_0001s35280
Populus trichocarpa
POPTR_0001s35280
I
0.889
PRUPE_ppa018381mg
Prunus persica
PRUPE_ppa018381mg
I
0.889
Eucgr.I01750
Eucalyptus grandis
Eucgr.I01750
I
0.889
GLYMA19G12650
Glycine max
GLYMA19G12650
I
0.889
SapurV1A.1328s0080
Salix purpurea
SapurV1A.1328s0080
I
0.889
Pm015649
Prunus mume
Pm015649
I
0.889
Lus10022264.g
Linum usitatissimum
Lus10022264.g
I
0.889
PK26472.1
Cannabis sativa
PK26472.1
I
0.889
GLYMA16G07770
Glycine max
GLYMA16G07770
I
0.879
Cucsa.339980
Cucumis sativus
Cucsa.339980
I
0.879
Cla017388
Citrullus lanatus
Cla017388
I
0.879
MTR_7g033800
Medicago truncatula
MTR_7g033800
I
0.879
MDP0000848210
Malus domestica
MDP0000848210
I
0.869
evm.TU.supercontig_108.62
Carica papaya
evm.TU.supercontig_108.62
I
0.869
Ca_24372
Cicer arietinum
Ca_24372
I
0.869
Cucsa.011300
Cucumis sativus
Cucsa.011300
I
0.869
Gorai.006G033100
Gossypium raimondii
Gorai.006G033100
I
0.859
Ciclev10017006m.g
Citrus clementina
Ciclev10017006m.g
I
0.859
Cla010600
Citrullus lanatus
Cla010600
I
0.859
PGSC0003DMG400012629
Solanum tuberosum
PGSC0003DMG400012629
I
0.859
TCM_016952
Theobroma cacao
TCM_016952
I
0.859
GLYMA19G00390
Glycine max
GLYMA19G00390
I
0.859
gene28478-v1.0-hybrid
Fragaria vesca
gene28478-v1.0-hybrid
I
0.859
GLYMA05G08870
Glycine max
GLYMA05G08870
I
0.859
LBD25
Vitis vinifera
VIT_14s0066g00680
I
0.859
orange1.1g031572m.g
Citrus sinensis
orange1.1g031572m.g
I
0.859
OMERI01G04420
Oryza meridionalis
OMERI01G04420
I
0.848
PGSC0003DMG400006914
Solanum tuberosum
PGSC0003DMG400006914
I
0.848
Aquca_061_00084
Aquilegia coerulea
Aquca_061_00084
I
0.848
Solyc02g086480.1
Solanum lycopersicum
Solyc02g086480.1
I
0.848
PGSC0003DMG400018112
Solanum tuberosum
PGSC0003DMG400018112
I
0.848
Si002632m.g
Setaria italica
Si002632m.g
I
0.848
AC233943.1_FG002
Zea mays
AC233943.1_FG002
I
0.848
Sb03g004590
Sorghum bicolor
Sb03g004590
I
0.848
Gorai.012G063800
Gossypium raimondii
Gorai.012G063800
I
0.848
LPERR01G04140
Leersia perrieri
LPERR01G04140
I
0.848
Pavir.Eb00458
Panicum virgatum
Pavir.Eb00458
I
0.848
Pavir.J38993
Panicum virgatum
Pavir.J38993
I
0.848
LjSGA_042891.1
Lotus japonicus
LjSGA_042891.1
I
0.848
OB01G14220
Oryza brachyantha
OB01G14220
I
0.848
GLYMA04G36080
Glycine max
GLYMA04G36080
I
0.848
evm.TU.supercontig_110.17
Carica papaya
evm.TU.supercontig_110.17
I
0.838
GLYMA05G02530
Glycine max
GLYMA05G02530
I
0.838
GLYMA06G18861
Glycine max
GLYMA06G18861
I
0.838
MDP0000254288
Malus domestica
MDP0000254288
I
0.838
Solyc02g067800.2
Solanum lycopersicum
Solyc02g067800.2
I
0.838
TCM_012190
Theobroma cacao
TCM_012190
I
0.838
OGLUM01G04900
Oryza glumaepatula
OGLUM01G04900
I
0.838
ONIVA01G04930
Oryza nivara
ONIVA01G04930
I
0.838
Cla019510
Citrullus lanatus
Cla019510
I
0.838
LOB
Vitis vinifera
VIT_17s0000g09010
I
0.838
OS01G0169400
Oryza sativa
OS01G0169400
I
0.838
ORGLA01G0040900
Oryza glaberrima
ORGLA01G0040900
I
0.838
ORUFI01G04670
Oryza rufipogon
ORUFI01G04670
I
0.838
GLYMA17G09380
Glycine max
GLYMA17G09380
I
0.838
cassava33952.m1
Manihot esculenta
cassava33952.m1
I
0.838
MTR_6g005070
Medicago truncatula
MTR_6g005070
I
0.838
chr2.LjT30P12.80.nc
Lotus japonicus
chr2.LjT30P12.80.nc
I
0.838
Cucsa.196600
Cucumis sativus
Cucsa.196600
I
0.838
cassava19770.m1
Manihot esculenta
cassava19770.m1
I
0.838
OBART01G04470
Oryza barthii
OBART01G04470
I
0.838
30147.m013890
Ricinus communis
30147.m013890
I
0.838
MDP0000130659
Malus domestica
MDP0000130659
I
0.838
Cagra.5118s0045
Capsella grandiflora
Cagra.5118s0045
I
0.828
mgf024603m
Mimulus guttatus
mgf024603m
I
0.828
Thhalv10004979m.g
Eutrema salsugineum
Thhalv10004979m.g
I
0.828
LOB
Arabidopsis thaliana
AT5G63090
D
0.828
SapurV1A.0011s0490
Salix purpurea
SapurV1A.0011s0490
I
0.828
chr1.CM0171.410.nc
Lotus japonicus
chr1.CM0171.410.nc
I
0.828
Pm024312
Prunus mume
Pm024312
I
0.828
Bo3g104760
Brassica oleracea
Bo3g104760
I
0.828
Bostr.0568s0498
Boechera stricta
Bostr.0568s0498
I
0.828
BRADI2G04270
Brachypodium distachyon
BRADI2G04270
I
0.828
MTR_4g105170
Medicago truncatula
MTR_4g105170
I
0.828
Solyc03g112430.1
Solanum lycopersicum
Solyc03g112430.1
I
0.828
LOB
Arabidopsis lyrata
scaffold_802995.1
I
0.828
POPTR_0012s08540
Populus trichocarpa
POPTR_0012s08540
I
0.828
PRUPE_ppa023059mg
Prunus persica
PRUPE_ppa023059mg
I
0.828
POPTR_0015s09370
Populus trichocarpa
POPTR_0015s09370
I
0.828
F775_25656
Aegilops tauschii
F775_25656
I
0.828
Lus10027676.g
Linum usitatissimum
Lus10027676.g
I
0.828
Bra038606
Brassica rapa
Bra038606
I
0.828
Lus10039940.g
Linum usitatissimum
Lus10039940.g
I
0.828
Ca_08824
Cicer arietinum
Ca_08824
I
0.828
Cucsa.098680
Cucumis sativus
Cucsa.098680
I
0.818
mgf003146m
Mimulus guttatus
mgf003146m
I
0.818
Gorai.007G075700
Gossypium raimondii
Gorai.007G075700
I
0.818
Cla003499
Citrullus lanatus
Cla003499
I
0.818
MTR_3g077240
Medicago truncatula
MTR_3g077240
I
0.818
Bo9g017470
Brassica oleracea
Bo9g017470
I
0.818
Carubv10028397m.g
Capsella rubella
Carubv10028397m.g
I
0.818
gene31797-v1.0-hybrid
Fragaria vesca
gene31797-v1.0-hybrid
I
0.818
mgf016361m
Mimulus guttatus
mgf016361m
I
0.808
Aquca_011_00559
Aquilegia coerulea
Aquca_011_00559
I
0.808
SapurV1A.1247s0030
Salix purpurea
SapurV1A.1247s0030
I
0.808
Ca_07463
Cicer arietinum
Ca_07463
I
0.808
Bra035860
Brassica rapa
Bra035860
I
0.808
MTR_6g005080
Medicago truncatula
MTR_6g005080
I
0.808
orange1.1g036845m.g
Citrus sinensis
orange1.1g036845m.g
I
0.798
Ciclev10022371m.g
Citrus clementina
Ciclev10022371m.g
I
0.798
PK21510.1
Cannabis sativa
PK21510.1
I
0.798
Eucgr.K02809
Eucalyptus grandis
Eucgr.K02809
I
0.798
Cagra.5575s0004
Capsella grandiflora
Cagra.5575s0004
I
0.788
Carubv10018238m.g
Capsella rubella
Carubv10018238m.g
I
0.788
Thhalv10005120m.g
Eutrema salsugineum
Thhalv10005120m.g
I
0.788
LBD25
Arabidopsis thaliana
AT3G27650
I
0.788
PGSC0003DMG400027078
Solanum tuberosum
PGSC0003DMG400027078
I
0.788
Solyc06g071660.1
Solanum lycopersicum
Solyc06g071660.1
I
0.788
LBD25
Arabidopsis lyrata
fgenesh2_kg.5__545__AT3G27650.1
I
0.778
Bra025294
Brassica rapa
Bra025294
I
0.778
Bostr.0556s0446
Boechera stricta
Bostr.0556s0446
I
0.778
Bo7g085860
Brassica oleracea
Bo7g085860
I
0.778
Bra039072
Brassica rapa
Bra039072
I
0.768
Bo9g008330
Brassica oleracea
Bo9g008330
I
0.768
Bo2g144870
Brassica oleracea
Bo2g144870
I
0.758
Bra033019
Brassica rapa
Bra033019
I
0.758
SELMODRAFT_68988
Selaginella moellendorffii
SELMODRAFT_68988
I
0.747
SELMODRAFT_59324
Selaginella moellendorffii
SELMODRAFT_59324
I
0.747
GLYMA16G09720
Glycine max
GLYMA16G09720
I
0.732
gw1.170.40.1
Physcomitrella patens
gw1.170.40.1
I
0.727
gw1.170.36.1
Physcomitrella patens
gw1.170.36.1
I
0.727
Cucsa.178830
Cucumis sativus
Cucsa.178830
I
0.717
Cla005851
Citrullus lanatus
Cla005851
I
0.717
TRIUR3_10339
Triticum urartu
TRIUR3_10339
I
0.717
AMTR_s00066p00120340
Amborella trichopoda
AMTR_s00066p00120340
I
0.717
MTR_3g073690
Medicago truncatula
MTR_3g073690
I
0.717
Solyc03g063140.2
Solanum lycopersicum
Solyc03g063140.2
I
0.717
PGSC0003DMG400000974
Solanum tuberosum
PGSC0003DMG400000974
I
0.717
gw1.71.84.1
Physcomitrella patens
gw1.71.84.1
I
0.717
AS2
Vitis vinifera
VIT_00s0340g00090
I
0.717
Ca_20200
Cicer arietinum
Ca_20200
I
0.707
Ca_11161
Cicer arietinum
Ca_11161
I
0.707
gw1.12.172.1
Physcomitrella patens
gw1.12.172.1
I
0.707
Solyc11g008830.1
Solanum lycopersicum
Solyc11g008830.1
I
0.707
gene21541-v1.0-hybrid
Fragaria vesca
gene21541-v1.0-hybrid
I
0.707
MTR_8g040900
Medicago truncatula
MTR_8g040900
I
0.707
PRUPE_ppa027059mg
Prunus persica
PRUPE_ppa027059mg
I
0.707
MDP0000273432
Malus domestica
MDP0000273432
I
0.707
GLYMA15G36310
Glycine max
GLYMA15G36310
I
0.707
mgf014755m
Mimulus guttatus
mgf014755m
I
0.707
GLYMA13G26020
Glycine max
GLYMA13G26020
I
0.707
Eucgr.C02148
Eucalyptus grandis
Eucgr.C02148
I
0.707