MTR_6g005080 (Medicago truncatula)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 MTR_6g005080 T245467_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AES74366 LOB 10 108

Links

Other LOB family TFs
Other Medicago truncatula TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MTR_6g005070 Medicago truncatula MTR_6g005070 I 0.949
chr2.LjT30P12.80.nc Lotus japonicus chr2.LjT30P12.80.nc I 0.909
GLYMA05G08870 Glycine max GLYMA05G08870 I 0.899
GLYMA19G00390 Glycine max GLYMA19G00390 I 0.899
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.899
Eucgr.J02237 Eucalyptus grandis Eucgr.J02237 I 0.899
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.899
PRUPE_ppa018381mg Prunus persica PRUPE_ppa018381mg I 0.889
POPTR_0001s35280 Populus trichocarpa POPTR_0001s35280 I 0.889
MTR_7g033800 Medicago truncatula MTR_7g033800 I 0.889
Pm015649 Prunus mume Pm015649 I 0.889
cassava12464.valid.m1 Manihot esculenta cassava12464.valid.m1 I 0.889
SapurV1A.1328s0080 Salix purpurea SapurV1A.1328s0080 I 0.889
PK26472.1 Cannabis sativa PK26472.1 I 0.889
Lus10022264.g Linum usitatissimum Lus10022264.g I 0.889
29917.m001993 Ricinus communis 29917.m001993 I 0.889
GLYMA16G07770 Glycine max GLYMA16G07770 I 0.879
Cucsa.011300 Cucumis sativus Cucsa.011300 I 0.879
Eucgr.I01750 Eucalyptus grandis Eucgr.I01750 I 0.879
GLYMA19G12650 Glycine max GLYMA19G12650 I 0.879
Ca_24372 Cicer arietinum Ca_24372 I 0.879
orange1.1g031572m.g Citrus sinensis orange1.1g031572m.g I 0.869
Ciclev10017006m.g Citrus clementina Ciclev10017006m.g I 0.869
Cla010600 Citrullus lanatus Cla010600 I 0.869
MDP0000848210 Malus domestica MDP0000848210 I 0.869
TCM_016952 Theobroma cacao TCM_016952 I 0.869
Gorai.012G063800 Gossypium raimondii Gorai.012G063800 I 0.859
LBD25 Vitis vinifera VIT_14s0066g00680 I 0.859
PGSC0003DMG400012629 Solanum tuberosum PGSC0003DMG400012629 I 0.848
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.848
evm.TU.supercontig_108.62 Carica papaya evm.TU.supercontig_108.62 I 0.848
Cla017388 Citrullus lanatus Cla017388 I 0.848
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.848
LOB Arabidopsis lyrata scaffold_802995.1 I 0.838
Bostr.0568s0498 Boechera stricta Bostr.0568s0498 I 0.838
Bra038606 Brassica rapa Bra038606 I 0.838
Cagra.5118s0045 Capsella grandiflora Cagra.5118s0045 I 0.838
Gorai.006G033100 Gossypium raimondii Gorai.006G033100 I 0.838
Lus10027676.g Linum usitatissimum Lus10027676.g I 0.838
Bo3g104760 Brassica oleracea Bo3g104760 I 0.838
Thhalv10004979m.g Eutrema salsugineum Thhalv10004979m.g I 0.838
LOB Arabidopsis thaliana AT5G63090 D 0.838
Cla019510 Citrullus lanatus Cla019510 I 0.828
30147.m013890 Ricinus communis 30147.m013890 I 0.828
MDP0000130659 Malus domestica MDP0000130659 I 0.828
LBD25 Arabidopsis thaliana AT3G27650 I 0.828
Lus10039940.g Linum usitatissimum Lus10039940.g I 0.828
LOB Vitis vinifera VIT_17s0000g09010 I 0.828
MDP0000254288 Malus domestica MDP0000254288 I 0.828
cassava33952.m1 Manihot esculenta cassava33952.m1 I 0.828
Carubv10028397m.g Capsella rubella Carubv10028397m.g I 0.828
TCM_012190 Theobroma cacao TCM_012190 I 0.828
Cagra.5575s0004 Capsella grandiflora Cagra.5575s0004 I 0.828
mgf024603m Mimulus guttatus mgf024603m I 0.828
Cucsa.196600 Cucumis sativus Cucsa.196600 I 0.828
Carubv10018238m.g Capsella rubella Carubv10018238m.g I 0.828
Bo9g017470 Brassica oleracea Bo9g017470 I 0.828
GLYMA05G02530 Glycine max GLYMA05G02530 I 0.828
cassava19770.m1 Manihot esculenta cassava19770.m1 I 0.828
GLYMA17G09380 Glycine max GLYMA17G09380 I 0.828
MTR_3g077240 Medicago truncatula MTR_3g077240 I 0.828
PGSC0003DMG400006914 Solanum tuberosum PGSC0003DMG400006914 I 0.828
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.828
Solyc02g086480.1 Solanum lycopersicum Solyc02g086480.1 I 0.828
SapurV1A.0011s0490 Salix purpurea SapurV1A.0011s0490 I 0.818
Pm024312 Prunus mume Pm024312 I 0.818
MTR_4g105170 Medicago truncatula MTR_4g105170 I 0.818
Gorai.007G075700 Gossypium raimondii Gorai.007G075700 I 0.818
POPTR_0012s08540 Populus trichocarpa POPTR_0012s08540 I 0.818
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.818
PRUPE_ppa023059mg Prunus persica PRUPE_ppa023059mg I 0.818
PGSC0003DMG400018112 Solanum tuberosum PGSC0003DMG400018112 I 0.818
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.818
GLYMA06G18861 Glycine max GLYMA06G18861 I 0.818
LBD25 Arabidopsis lyrata fgenesh2_kg.5__545__AT3G27650.1 I 0.818
Ca_07463 Cicer arietinum Ca_07463 I 0.818
Ca_08824 Cicer arietinum Ca_08824 I 0.818
Thhalv10005120m.g Eutrema salsugineum Thhalv10005120m.g I 0.818
Bostr.0556s0446 Boechera stricta Bostr.0556s0446 I 0.818
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.818
Aquca_011_00559 Aquilegia coerulea Aquca_011_00559 I 0.808
gene31797-v1.0-hybrid Fragaria vesca gene31797-v1.0-hybrid I 0.808
Bo9g008330 Brassica oleracea Bo9g008330 I 0.808
Bo7g085860 Brassica oleracea Bo7g085860 I 0.808
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.808
OB01G14220 Oryza brachyantha OB01G14220 I 0.808
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.808
mgf003146m Mimulus guttatus mgf003146m I 0.808
Bra039072 Brassica rapa Bra039072 I 0.808
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.808
Bra035860 Brassica rapa Bra035860 I 0.808
GLYMA04G36080 Glycine max GLYMA04G36080 I 0.808
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.808
Si002632m.g Setaria italica Si002632m.g I 0.808
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.808
Bra025294 Brassica rapa Bra025294 I 0.808
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.808
cassava3724.m1 Manihot esculenta cassava3724.m1 I 0.808
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.808
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.808
AMTR_s00083p00067130 Amborella trichopoda AMTR_s00083p00067130 I 0.806
SapurV1A.1247s0030 Salix purpurea SapurV1A.1247s0030 I 0.798
Eucgr.K02809 Eucalyptus grandis Eucgr.K02809 I 0.798
Bo2g144870 Brassica oleracea Bo2g144870 I 0.798
ONIVA01G04930 Oryza nivara ONIVA01G04930 I 0.798
ORUFI01G04670 Oryza rufipogon ORUFI01G04670 I 0.798
Bra033019 Brassica rapa Bra033019 I 0.798
OBART01G04470 Oryza barthii OBART01G04470 I 0.798
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.798
ORGLA01G0040900 Oryza glaberrima ORGLA01G0040900 I 0.798
OS01G0169400 Oryza sativa OS01G0169400 I 0.798
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.798
OGLUM01G04900 Oryza glumaepatula OGLUM01G04900 I 0.798
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.788
PK21510.1 Cannabis sativa PK21510.1 I 0.788
F775_25656 Aegilops tauschii F775_25656 I 0.788
Cla003499 Citrullus lanatus Cla003499 I 0.778
mgf016361m Mimulus guttatus mgf016361m I 0.778
Solyc06g071660.1 Solanum lycopersicum Solyc06g071660.1 I 0.778
PGSC0003DMG400027078 Solanum tuberosum PGSC0003DMG400027078 I 0.778
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.759
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.756
PK18922.1 Cannabis sativa PK18922.1 I 0.754
BGIOSGA002306 Oryza indica BGIOSGA002306 I 0.754
PK29334.1 Cannabis sativa PK29334.1 I 0.750
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.741
F775_33210 Aegilops tauschii F775_33210 I 0.740
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.737
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.737
PK13228.1 Cannabis sativa PK13228.1 I 0.734
gw1.170.36.1 Physcomitrella patens gw1.170.36.1 I 0.727
gw1.170.40.1 Physcomitrella patens gw1.170.40.1 I 0.727
Traes_1DL_1290B6A52 Triticum aestivum Traes_1DL_1290B6A52 I 0.723
gw1.71.84.1 Physcomitrella patens gw1.71.84.1 I 0.717
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.717
gw1.12.172.1 Physcomitrella patens gw1.12.172.1 I 0.707
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.702