BGIOSGA002306 (Oryza indica)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 BGIOSGA002306 T244915_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.869 0.869
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.836 0.836
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA002306-PA LOB 30 90

Links

Other LOB family TFs
Other Oryza indica TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si002632m.g Setaria italica Si002632m.g I 0.934
AC233943.1_FG002 Zea mays AC233943.1_FG002 I 0.934
OMERI01G04420 Oryza meridionalis OMERI01G04420 I 0.934
LPERR01G04140 Leersia perrieri LPERR01G04140 I 0.934
BRADI2G04270 Brachypodium distachyon BRADI2G04270 I 0.934
Sb03g004590 Sorghum bicolor Sb03g004590 I 0.934
Pavir.J38993 Panicum virgatum Pavir.J38993 I 0.934
OB01G14220 Oryza brachyantha OB01G14220 I 0.934
Pavir.Eb00458 Panicum virgatum Pavir.Eb00458 I 0.934
F775_25656 Aegilops tauschii F775_25656 I 0.918
GSMUA_Achr2G23130_001 Musa acuminata GSMUA_Achr2G23130_001 I 0.918
PK18922.1 Cannabis sativa PK18922.1 I 0.912
VIT_00s0215g00010 Vitis vinifera VIT_00s0215g00010 I 0.907
chr1.CM0171.410.nc Lotus japonicus chr1.CM0171.410.nc I 0.885
30147.m013890 Ricinus communis 30147.m013890 I 0.885
POPTR_0015s09370 Populus trichocarpa POPTR_0015s09370 I 0.885
evm.TU.supercontig_110.17 Carica papaya evm.TU.supercontig_110.17 I 0.885
LOB Vitis vinifera VIT_17s0000g09010 I 0.885
Aquca_061_00084 Aquilegia coerulea Aquca_061_00084 I 0.885
Cucsa.098680 Cucumis sativus Cucsa.098680 I 0.869
Cucsa.178830 Cucumis sativus Cucsa.178830 I 0.852
Ca_07463 Cicer arietinum Ca_07463 I 0.852
Cla017388 Citrullus lanatus Cla017388 I 0.852
Cucsa.339980 Cucumis sativus Cucsa.339980 I 0.852
Cla005851 Citrullus lanatus Cla005851 I 0.852
orange1.1g036845m.g Citrus sinensis orange1.1g036845m.g I 0.836
MDP0000643326 Malus domestica MDP0000643326 I 0.836
Ciclev10022371m.g Citrus clementina Ciclev10022371m.g I 0.836
mgf024603m Mimulus guttatus mgf024603m I 0.836
Solyc03g112430.1 Solanum lycopersicum Solyc03g112430.1 I 0.836
SapurV1A.0093s0490 Salix purpurea SapurV1A.0093s0490 I 0.820
MDP0000848210 Malus domestica MDP0000848210 I 0.820
POPTR_0010s18460 Populus trichocarpa POPTR_0010s18460 I 0.820
Solyc02g067800.2 Solanum lycopersicum Solyc02g067800.2 I 0.820
Ca_24372 Cicer arietinum Ca_24372 I 0.803
Pavir.J16692 Panicum virgatum Pavir.J16692 I 0.803
Cla010600 Citrullus lanatus Cla010600 I 0.803
Aquca_007_00083 Aquilegia coerulea Aquca_007_00083 I 0.803
GRMZM2G118250 Zea mays GRMZM2G118250 I 0.787
Si002599m.g Setaria italica Si002599m.g I 0.787
Sb03g042310 Sorghum bicolor Sb03g042310 I 0.787
LBD6 Oryza indica BGIOSGA004955 I 0.787
Traes_1AL_4B89B33E3 Triticum aestivum Traes_1AL_4B89B33E3 I 0.787
LPERR01G34430 Leersia perrieri LPERR01G34430 I 0.787
GSMUA_Achr7G23710_001 Musa acuminata GSMUA_Achr7G23710_001 I 0.787
OBART01G39990 Oryza barthii OBART01G39990 I 0.787
Gorai.011G104600 Gossypium raimondii Gorai.011G104600 I 0.787
TCM_000560 Theobroma cacao TCM_000560 I 0.787
Pavir.Ea03589 Panicum virgatum Pavir.Ea03589 I 0.787
LPERR03G21590 Leersia perrieri LPERR03G21590 I 0.787
GLYMA15G36310 Glycine max GLYMA15G36310 I 0.787
ONIVA01G44840 Oryza nivara ONIVA01G44840 I 0.787
OPUNC01G38680 Oryza punctata OPUNC01G38680 I 0.787
OMERI01G36900 Oryza meridionalis OMERI01G36900 I 0.787
OB01G48740 Oryza brachyantha OB01G48740 I 0.787
OGLUM01G44190 Oryza glumaepatula OGLUM01G44190 I 0.787
OLONG_016086 Oryza longistaminata OLONG_016086 I 0.787
ORGLA01G0339000 Oryza glaberrima ORGLA01G0339000 I 0.787
ORUFI01G43320 Oryza rufipogon ORUFI01G43320 I 0.787
MTR_8g040900 Medicago truncatula MTR_8g040900 I 0.787
Ca_20200 Cicer arietinum Ca_20200 I 0.787
GLYMA13G26020 Glycine max GLYMA13G26020 I 0.787
LBD6 Oryza sativa OS01G0889400 I 0.787
F775_21760 Aegilops tauschii F775_21760 I 0.787
POPTR_0007s11460 Populus trichocarpa POPTR_0007s11460 I 0.770
cassava16846.m1 Manihot esculenta cassava16846.m1 I 0.770
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.766
Cla020438 Citrullus lanatus Cla020438 I 0.754
TRIUR3_06488 Triticum urartu TRIUR3_06488 I 0.754
PGSC0003DMG402000764 Solanum tuberosum PGSC0003DMG402000764 I 0.754
LBD25 Arabidopsis thaliana AT3G27650 I 0.754
POPTR_0005s14150 Populus trichocarpa POPTR_0005s14150 I 0.754
Si036905m.g Setaria italica Si036905m.g I 0.754
MTR_6g005080 Medicago truncatula MTR_6g005080 I 0.754
Pavir.J03238 Panicum virgatum Pavir.J03238 I 0.754
TRIUR3_23928 Triticum urartu TRIUR3_23928 I 0.754
Solyc02g065150.1 Solanum lycopersicum Solyc02g065150.1 I 0.754
GSMUA_Achr11G26500_001 Musa acuminata GSMUA_Achr11G26500_001 I 0.742
GSMUA_Achr5G25770_001 Musa acuminata GSMUA_Achr5G25770_001 I 0.742
Lus10001139.g Linum usitatissimum Lus10001139.g I 0.741
PK21617.1 Cannabis sativa PK21617.1 I 0.739
MDP0000777060 Malus domestica MDP0000777060 I 0.738
BRADI1G14677 Brachypodium distachyon BRADI1G14677 N 0.738
PGSC0003DMG401000764 Solanum tuberosum PGSC0003DMG401000764 I 0.738
chr2.LjT16G06.10.nd Lotus japonicus chr2.LjT16G06.10.nd I 0.738
mgf004296m Mimulus guttatus mgf004296m I 0.738
mgf003146m Mimulus guttatus mgf003146m I 0.738
OLONG_009404 Oryza longistaminata OLONG_009404 I 0.722
Bo4g151770 Brassica oleracea Bo4g151770 I 0.721
MDP0000121203 Malus domestica MDP0000121203 I 0.721
Bra032153 Brassica rapa Bra032153 I 0.721
MDP0000277239 Malus domestica MDP0000277239 I 0.721
GRMZM2G154320 Zea mays GRMZM2G154320 N 0.721
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.721
PRUPE_ppa015145mg Prunus persica PRUPE_ppa015145mg I 0.721
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.721
Ca_02125 Cicer arietinum Ca_02125 I 0.721
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.721
GLYMA16G09720 Glycine max GLYMA16G09720 I 0.707
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.705
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.705
PK13228.1 Cannabis sativa PK13228.1 I 0.705
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.705
MTR_3g452660 Medicago truncatula MTR_3g452660 N 0.705
Bo2g144870 Brassica oleracea Bo2g144870 I 0.705
SapurV1A.0811s0010 Salix purpurea SapurV1A.0811s0010 I 0.705
Pm011040 Prunus mume Pm011040 I 0.705
MDP0000284409 Malus domestica MDP0000284409 I 0.705
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.705
MDP0000268890 Malus domestica MDP0000268890 I 0.705
Bra033019 Brassica rapa Bra033019 I 0.705
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.705
30169.m006340 Ricinus communis 30169.m006340 I 0.705
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.705
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.705
Ca_02124 Cicer arietinum Ca_02124 I 0.705